PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871791.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 380aa    MW: 42438.6 Da    PI: 8.1684
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871791.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.35.9e-40117193278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  XP_015871791.1 117 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDEVKRSCRKRLDGHNRRRRKSQP 193
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-31110178IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.009114191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-37115196IPR004333Transcription factor, SBP-box
PfamPF031101.3E-29117190IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVLLKGYGNQ GEQIEKVDGV MEWDLKEFAW ESTHELDQQK EESDLTAMVE FSTSKKQTTT  60
TTVNGSSGDL KLTVVDSAEP VSFSKSNEAR TTSILASSPT SPGPSSKKVN GAQKVSCLVD  120
DCKADLSSCR EYHKRHRVCE RHSKTPTVMV KGEEKRFCQQ CSRFHALGEF DEVKRSCRKR  180
LDGHNRRRRK SQPESLLFTS KSFLSSAYKG PKILHFGSPP QIYAPTATTT MRNGSEPFVY  240
GRQQRNRPPD FSNGRDTQFF FLQENHPEKS NQATPEAFLC DYPILNTIKG QTEKVPNEVS  300
TGGCALYLLS SNPSSLQIPA GMDVNHHLVQ SNDQMHQSSL QFPNSFSAFD HGKDKPQNMI  360
LRMGPDGLLE HVGAPQAFPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-251171901184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871791.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871791.10.0squamosa promoter-binding-like protein 13A isoform X3
RefseqXP_015871795.10.0squamosa promoter-binding-like protein 13A isoform X3
RefseqXP_015871800.10.0squamosa promoter-binding-like protein 13A isoform X3
TrEMBLA0A2P5FC861e-115A0A2P5FC86_TREOI; SBP-box transcription factor
STRINGXP_010112387.11e-88(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-40SBP family protein