PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871784.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 199aa    MW: 22530.4 Da    PI: 7.5044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18755254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  XP_015871784.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDQAARLMC 55
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-33666No hitNo description
SuperFamilySSF541711.44E-20765IPR016177DNA-binding domain
SMARTSM003801.6E-39770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-33764IPR001471AP2/ERF domain
PfamPF008472.6E-11756IPR001471AP2/ERF domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
PRINTSPR003673.3E-11819IPR001471AP2/ERF domain
PRINTSPR003673.3E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDQA ARLMCGPKAR  60
TNFAYNPNEP QSNSTKLLSA TLTAKLQKCN MVSLQMAKHQ QQQQQQPLLK EPEGAQSLPV  120
VNPPSTSIAG ICGVRGFEWP EMRQGGSQRP ELNWVGEQVQ GESTNTGQQF KALEDDHIEQ  180
MIEELLDYGY IELCPGVHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-16663159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-16663462ATERF1
3gcc_A9e-16663462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871784.11e-148ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-67ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLW9RS584e-94W9RS58_9ROSA; Ethylene-responsive transcription factor
STRINGXP_010097137.16e-95(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]