PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 360aa MW: 40305.2 Da PI: 8.334 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.4 | 5.4e-40 | 97 | 173 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ XP_015871763.1 97 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDEVKRSCRKRLDGHNRRRRKSQP 173 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-31 | 90 | 158 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.009 | 94 | 171 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-37 | 95 | 176 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-29 | 97 | 170 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEWDLKEFAW ESTHELDQQK EESDLTAMVE FSTSKKQTTT TTVNGSSGDL KLTVVDSAEP 60 VSFSKSNEAR TTSILASSPT SPGPSSKKVN GAQKVSCLVD DCKADLSSCR EYHKRHRVCE 120 RHSKTPTVMV KGEEKRFCQQ CSRFHALGEF DEVKRSCRKR LDGHNRRRRK SQPESLLFTS 180 KSFLSSAYKG PKILHFGSPP QIYAPTATTT MRNGSEPFVY GRQQRNRPPD FSNGRDTQFF 240 FLQENHPEKS NQATPEAFLC DYPILNTIKG QTEKVPNEVS TGGCALYLLS SNPSSLQIPA 300 GMDVNHHLVQ SNDQMHQSLL QFPNSFSAFD HGKDKPQNMI LRMGPDGLLE HVGAPQAFPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-25 | 97 | 170 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871763.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871759.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
Refseq | XP_015871761.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X5 | ||||
Refseq | XP_015871763.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X5 | ||||
TrEMBL | A0A2P5FC86 | 1e-111 | A0A2P5FC86_TREOI; SBP-box transcription factor | ||||
STRING | XP_010112387.1 | 3e-89 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-40 | SBP family protein |