PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871759.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 388aa    MW: 43549.8 Da    PI: 8.1684
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.36.1e-40125201278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v++C+adls+++eyh+rh+vCe hsk+p+v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  XP_015871759.1 125 CLVDDCKADLSSCREYHKRHRVCERHSKTPTVMVKGEEKRFCQQCSRFHALGEFDEVKRSCRKRLDGHNRRRRKSQP 201
                     **************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-31118186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.009122199IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-37123204IPR004333Transcription factor, SBP-box
PfamPF031101.4E-29125198IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MYFASDFFLQ LRNQKGNQGE QIEKVDGVME WDLKEFAWES THELDQQKEE SDLTAMVEFS  60
TSKKQTTTTT VNGSSGDLKL TVVDSAEPVS FSKSNEARTT SILASSPTSP GPSSKKVNGA  120
QKVSCLVDDC KADLSSCREY HKRHRVCERH SKTPTVMVKG EEKRFCQQCS RFHALGEFDE  180
VKRSCRKRLD GHNRRRRKSQ PESLLFTSKS FLSSAYKGPK ILHFGSPPQI YAPTATTTMR  240
NGSEPFVYGR QQRNRPPDFS NGRDTQFFFL QENHPEKSNQ ATPEAFLCDY PILNTIKGQT  300
EKVPNEVSTG GCALYLLSSN PSSLQIPAGM DVNHHLVQSN DQMHQSLLQF PNSFSAFDHG  360
KDKPQNMILR MGPDGLLEHV GAPQAFPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-251251981184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871759.10.0squamosa promoter-binding-like protein 13A isoform X2
TrEMBLA0A2P5FC861e-114A0A2P5FC86_TREOI; SBP-box transcription factor
STRINGXP_010112387.15e-89(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-40SBP family protein