PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871570.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 444aa    MW: 47594.8 Da    PI: 9.1689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-111541127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++rtG+C yG+rC+++H++
  XP_015871570.1 15 PGVPNCVYYMRTGFCGYGSRCRYNHPR 41
                    5789*********************96 PP
2zf-CCCH40.25.7e-136286327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C+++++tGtCk+G++CkF+H++
  XP_015871570.1 62 EPVCQYYLKTGTCKFGASCKFHHPK 86
                    789********************96 PP
3zf-CCCH36.67.3e-12108133227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG+Ck+G +CkF+H++
  XP_015871570.1 108 GETECSYYLKTGQCKFGITCKFHHPQ 133
                     7789********************97 PP
4zf-CCCH35.12.2e-11265291127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015871570.1 265 PGEPECQYYIKTGDCKYGSSCRYHHPR 291
                     5799*********************96 PP
5zf-CCCH352.4e-11312337227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +   C f++++G+Ck+G++CkF H++
  XP_015871570.1 312 GVQVCTFYLQNGHCKFGSTCKFDHPM 337
                     5678********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-61441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.221442IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-81641IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-61843IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-52041IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6765987IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-75986IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-66286IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-106286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-56486IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54106134IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5106133IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9108133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4112132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366264292IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5264291IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-8266291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6269293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5270291IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14310338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7312341IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9312337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5314337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MWQLGLSSES YPERPGVPNC VYYMRTGFCG YGSRCRYNHP RDRAAVAAAV RATGEYPERV  60
GEPVCQYYLK TGTCKFGASC KFHHPKHGGG SLSQAPLINI YGYPLRPGET ECSYYLKTGQ  120
CKFGITCKFH HPQPAGTSVS ASAPQFYPTV QSPSVPMPEQ YPGASTSLRV ARPPLLPGSY  180
VQGAYGPMLF PPGVVPLHGW SPYSAPVSPV LSPGAAQPPV AATSLYGVTQ LSSSSPALAR  240
PFPSLPSSIG ASSSSPKEQA FPERPGEPEC QYYIKTGDCK YGSSCRYHHP RDRVVPRTNC  300
LLSPIGLPLR PGVQVCTFYL QNGHCKFGST CKFDHPMGNM RYNPSASSLI DMPVTPYPVG  360
NLLGTLAPSS TSSELRPELI SGSKKESYST RMPSSANTSS SSVGLIFSQT GSVSLSEVQL  420
SSQSSVPLSS SRSTRQGGEV RRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871569.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM5VMU10.0M5VMU1_PRUPE; Uncharacterized protein
STRINGXP_008235007.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein