PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871569.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 479aa    MW: 51313.9 Da    PI: 8.9128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-115076127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++rtG+C yG+rC+++H++
  XP_015871569.1 50 PGVPNCVYYMRTGFCGYGSRCRYNHPR 76
                    5789*********************96 PP
2zf-CCCH40.16.3e-1397121327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+++++tGtCk+G++CkF+H++
  XP_015871569.1  97 EPVCQYYLKTGTCKFGASCKFHHPK 121
                     789********************96 PP
3zf-CCCH36.58.1e-12143168227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG+Ck+G +CkF+H++
  XP_015871569.1 143 GETECSYYLKTGQCKFGITCKFHHPQ 168
                     7789********************97 PP
4zf-CCCH352.4e-11300326127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015871569.1 300 PGEPECQYYIKTGDCKYGSSCRYHHPR 326
                     5799*********************96 PP
5zf-CCCH34.92.6e-11347372227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +   C f++++G+Ck+G++CkF H++
  XP_015871569.1 347 GVQVCTFYLQNGHCKFGSTCKFDHPM 372
                     5678********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-64976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.224977IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-794121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67694122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-697121IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1097121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-599121IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54141169IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366299327IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-8301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6304328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5305326IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14345373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7347376IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9347372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5349372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MELYGRSPAR NGSNPVHQPE WSPVPAGGET GLEESMWQLG LSSESYPERP GVPNCVYYMR  60
TGFCGYGSRC RYNHPRDRAA VAAAVRATGE YPERVGEPVC QYYLKTGTCK FGASCKFHHP  120
KHGGGSLSQA PLINIYGYPL RPGETECSYY LKTGQCKFGI TCKFHHPQPA GTSVSASAPQ  180
FYPTVQSPSV PMPEQYPGAS TSLRVARPPL LPGSYVQGAY GPMLFPPGVV PLHGWSPYSA  240
PVSPVLSPGA AQPPVAATSL YGVTQLSSSS PALARPFPSL PSSIGASSSS PKEQAFPERP  300
GEPECQYYIK TGDCKYGSSC RYHHPRDRVV PRTNCLLSPI GLPLRPGVQV CTFYLQNGHC  360
KFGSTCKFDH PMGNMRYNPS ASSLIDMPVT PYPVGNLLGT LAPSSTSSEL RPELISGSKK  420
ESYSTRMPSS ANTSSSSVGL IFSQTGSVSL SEVQLSSQSS VPLSSSRSTR QGGEVRRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871569.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314XWJ50.0A0A314XWJ5_PRUYE; Zinc finger CCCH domain-containing protein 32
STRINGXP_008235007.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein