PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015871376.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20305.1 Da PI: 9.2178

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015871376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.7	5.3e-17	21	65	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i nk n vtfskRrng++KKA+ L+ L + e+a+i+fs+ + XP_015871376.1 21 KKIVNKDNLIVTFSKRRNGLFKKASQLCLLSGSEIAIIVFSPGER 65 6799*************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.4E-27	13	72	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.138	13	73	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.76E-23	14	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-15	15	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-19	22	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-15	35	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-15	50	71	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MADSSSVARQ GGTGRKRIEI KKIVNKDNLI VTFSKRRNGL FKKASQLCLL SGSEIAIIVF 60 SPGERPYVFG HSSPDTVIHR FLGPAHSQGE ICGVNAKNHR EKIEVRGGNG TCEFWWDEEF 120 EHMELHELQR FKFALEELRT KLAEKTEETE RRVFERDYLG VNSVKVIDPV VRTGRSYP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015871376.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015871330.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015871332.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015871348.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015871376.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015871562.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015871599.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015871663.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015871728.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015872149.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015872392.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015872894.1	1e-130	agamous-like MADS-box protein AGL62
Refseq	XP_015900375.1	1e-130	agamous-like MADS-box protein AGL62
TrEMBL	A0A314Y443	3e-35	A0A314Y443_PRUYE; Agamous-like MADS-box protein AGL62
TrEMBL	A0A438EI26	2e-35	A0A438EI26_VITVI; Agamous-like MADS-box protein AGL62
STRING	XP_008241202.1	1e-36	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	4e-28	M-type_MADS family protein