PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 385aa MW: 41817.9 Da PI: 6.5829 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 6.1e-21 | 182 | 231 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g XP_015871199.1 182 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDEAAYKLRG 231 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.35E-34 | 181 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 182 | 240 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 182 | 239 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 182 | 240 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-38 | 182 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 183 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 183 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 205 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAATMEFYSS SGALQSSDPF TGELMEALEP FMKGVSSSSP SPSSSPSSNT HYPTSSPSPS 60 SSYGFLSFSP SFQTQPSFFQ DGCSTSMTHV VSDGFSTTQN NHFGLEQQPG CSIGLNNLTP 120 SQILEXPSSD PTPKPSKPSL AKSHHHLQRP QYQQQLNHTL SFLSPKPIPM KHVGSPPKPT 180 KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDEAAYKLR GDFARLNFPH 240 LRQNGSRVTG EYKPLHSSVD AKLQAICQSL AENNEKQGKA GKSSSGGATK RSSSSASNRS 300 QTNLNSTVTK VEQPEPESEP NGSENCCKVE VCSSSVVMSE SDGSAGSSPL SDLTFPEPTD 360 GPWDTSVPDN LILEKYPSEI DWESI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 181 | 239 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871199.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871199.1 | 0.0 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A2P5CKK3 | 1e-128 | A0A2P5CKK3_PARAD; AP2/ERF transcription factor | ||||
STRING | XP_009373164.1 | 1e-125 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 9e-52 | related to AP2 4 |