PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871156.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 402aa MW: 43966.8 Da PI: 9.5972 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00032 | 167 | 189 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H XP_015871156.1 167 ACSQCGEVFPKIESLELHQAVrH 189 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.808 | 166 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 166 | 189 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.49E-24 | 191 | 398 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 3.1E-13 | 193 | 398 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MALLTFVPEA TTESKKSPPS KRQRKQSKQQ RKPQSSWDQI KNLLTCKQIE GSRVHDPSKN 60 PTAYSKLGSS CSSICSFRDV VHGNSRVVHR ADNSPESSSV GQETRLLNRK AEASKSSSTR 120 SLSRSNGGTA YTSSSRGMQF RKLSGCYECH MIVDPSRYPV ARSTICACSQ CGEVFPKIES 180 LELHQAVRHA VSELGPEDSG RNIVEIIFKS SWLKKDNPIF KIERILKVHN TQRTIQRFED 240 CRDAVKTRAL NSTRKNPRCA ADGNELLRFH CTTISCALGA RGASSLCGSV PGCGVCTIVR 300 HGFQGKAGGE SKGVRTTASS GRAHDSLRCT DGRRAMLVCR VIAGRVKRNA DDAPPEEDGL 360 SAGSYDSVAG YTGIYSNLEE LILFNPKAIL PCFVVIYEAL ES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871156.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871156.1 | 0.0 | uncharacterized protein LOC107408289 | ||||
Refseq | XP_015902946.1 | 0.0 | uncharacterized protein LOC107435832 | ||||
TrEMBL | A0A2P5F7Z4 | 0.0 | A0A2P5F7Z4_TREOI; Zinc finger, C2H2 domain containing protein | ||||
STRING | XP_010104443.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10341 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-171 | C2H2-like zinc finger protein |