PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871145.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 372aa    MW: 40070.4 Da    PI: 8.5476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-115076127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++rtG+C yG+rC+++H++
  XP_015871145.1 50 PGVPNCVYYMRTGFCGYGSRCRYNHPR 76
                    5789*********************96 PP
2zf-CCCH40.54.6e-1397121327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+++++tGtCk+G++CkF+H++
  XP_015871145.1  97 EPVCQYYLKTGTCKFGASCKFHHPK 121
                     789********************96 PP
3zf-CCCH36.95.9e-12142167227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG+Ck+G +CkF+H++
  XP_015871145.1 142 GETECSYYLKTGQCKFGITCKFHHPQ 167
                     7789********************97 PP
4zf-CCCH35.41.8e-11299325127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015871145.1 299 PGEPECQYYIKTGDCKYGSSCRYHHPR 325
                     5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-64976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.224977IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-794121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67694122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-697121IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-1097121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-599121IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54140168IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4146166IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366298326IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5304325IPR000571Zinc finger, CCCH-type
SMARTSM003569.8344365IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.812344363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MELYGRSPAR NGSNPVHQPE WSPVPAGGET GLEESMWQLG LSSESYPERP GVPNCVYYMR  60
TGFCGYGSRC RYNHPRDRAA VAAAVRATGE YPERVGEPVC QYYLKTGTCK FGASCKFHHP  120
KHGGGSLSQA PLNIYGYPLR PGETECSYYL KTGQCKFGIT CKFHHPQPAG TSVSASAPQF  180
YPTVQSPSVP MPEQYPGAST SLRVARPPLL PGSYVQGAYG PMLFPPGVVP LHGWSPYSAP  240
VSPVLSPGAA QPPVAATSLY GVTQLSSSSP ALARPFPSLP SSIGASSSSP KEQAFPERPG  300
EPECQYYIKT GDCKYGSSCR YHHPRDRVVP RTNCLLSPIG LPLRPGVQVC TFYLQNGHCK  360
FGSPGTELEF AL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871145.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLW9SLY60.0W9SLY6_9ROSA; Zinc finger CCCH domain-containing protein 32
STRINGXP_010112757.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein