PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LSD | ||||||||
Protein Properties | Length: 132aa MW: 13874.2 Da PI: 8.555 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.3 | 2.5e-13 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr lL YPrGA++V+CalC+t XP_015871093.1 7 CNGCRSLLLYPRGATNVCCALCNT 30 ***********************8 PP | |||||||
2 | zf-LSD1 | 49.1 | 9.4e-16 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+t+ XP_015871093.1 46 CGGCRTLLMYTRGATSVRCSCCHTM 70 ***********************96 PP | |||||||
3 | zf-LSD1 | 50.9 | 2.6e-16 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V XP_015871093.1 84 CGNCRTMLMYPYGAPSVKCAVCHHV 108 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.3E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.4E-11 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.8E-17 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-13 | 46 | 69 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-14 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MQSQLVCNGC RSLLLYPRGA TNVCCALCNT LTSVPPPGME MAQLVCGGCR TLLMYTRGAT 60 SVRCSCCHTM NLASASNQFA QVNCGNCRTM LMYPYGAPSV KCAVCHHVTN VGTGNSRVPI 120 PVHRPGGTAN SG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871093.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871093.1 | 1e-90 | protein LSD1-like, partial | ||||
Swissprot | Q0J7V9 | 3e-55 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A2P5CRE2 | 2e-77 | A0A2P5CRE2_PARAD; Multihem cytochrome | ||||
STRING | XP_008225697.1 | 6e-77 | (Prunus mume) | ||||
STRING | EMJ13362 | 6e-77 | (Prunus persica) | ||||
STRING | XP_007159613.1 | 6e-77 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 6e-58 | lsd one like 1 |
Publications ? help Back to Top | |||
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