PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871093.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LSD
Protein Properties Length: 132aa    MW: 13874.2 Da    PI: 8.555
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.5e-13730124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    C+gCr lL YPrGA++V+CalC+t
  XP_015871093.1  7 CNGCRSLLLYPRGATNVCCALCNT 30
                    ***********************8 PP

2zf-LSD149.19.4e-164670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+Y+rGA+sVRC++C+t+
  XP_015871093.1 46 CGGCRTLLMYTRGATSVRCSCCHTM 70
                    ***********************96 PP

3zf-LSD150.92.6e-1684108125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Crt+L+YP+GApsV+Ca+C++V
  XP_015871093.1  84 CGNCRTMLMYPYGAPSVKCAVCHHV 108
                     ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.3E-12434IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-174372IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-134669IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-1481111IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MQSQLVCNGC RSLLLYPRGA TNVCCALCNT LTSVPPPGME MAQLVCGGCR TLLMYTRGAT  60
SVRCSCCHTM NLASASNQFA QVNCGNCRTM LMYPYGAPSV KCAVCHHVTN VGTGNSRVPI  120
PVHRPGGTAN SG
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871093.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871093.11e-90protein LSD1-like, partial
SwissprotQ0J7V93e-55LSD1_ORYSJ; Protein LSD1
TrEMBLA0A2P5CRE22e-77A0A2P5CRE2_PARAD; Multihem cytochrome
STRINGXP_008225697.16e-77(Prunus mume)
STRINGEMJ133626e-77(Prunus persica)
STRINGXP_007159613.16e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.16e-58lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]