PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 444aa MW: 47538.7 Da PI: 9.1689 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 16 | 42 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ XP_015871070.1 16 PGVPNCVYYMRTGFCGYGSRCRYNHPR 42 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.2 | 5.7e-13 | 63 | 87 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ XP_015871070.1 63 EPVCQYYLKTGTCKFGASCKFHHPK 87 789********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.3e-12 | 108 | 133 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ XP_015871070.1 108 GETECSYYLKTGQCKFGITCKFHHPQ 133 7789********************97 PP | |||||||
4 | zf-CCCH | 35.1 | 2.2e-11 | 265 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG CkyG++C+++H++ XP_015871070.1 265 PGEPECQYYIKTGDCKYGSSCRYHHPR 291 5799*********************96 PP | |||||||
5 | zf-CCCH | 35 | 2.4e-11 | 312 | 337 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C f++++G+Ck+G++CkF H++ XP_015871070.1 312 GVQVCTFYLQNGHCKFGSTCKFDHPM 337 5678********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.22 | 15 | 43 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 15 | 42 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 17 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 19 | 44 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 21 | 42 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 65 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-8 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 269 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 270 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 310 | 338 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-9 | 312 | 337 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-7 | 312 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 314 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
SMWQLGLSGE SYPERPGVPN CVYYMRTGFC GYGSRCRYNH PRDRAAVAAA VRATGEYPER 60 VGEPVCQYYL KTGTCKFGAS CKFHHPKHGG GSLSQAPLNI YGYPLRPGET ECSYYLKTGQ 120 CKFGITCKFH HPQPAGTSVS ASAPQFYPTV QSPSVPMPEQ YPGASTSLRV ARPPLLPGSY 180 VQGAYGPMLF PPGVVPLHGW SPYSAPVSPV LSPGAAQPPV AATSLYGVTQ LSSSSPALAR 240 PFPSLPSSIG ASSSSPKEQA FPERPGEPEC QYYIKTGDCK YGSSCRYHHP RDRVVPRTNC 300 LLSPIGLPLR PGVQVCTFYL QNGHCKFGST CKFDHPMGNM RYNPSASSLI DMPVTPYPVG 360 NLLGTLAPSS TSSELRPELI SGSKKESYST RMPSSANTSS SSVGLIFSQT GSVSLSEVQL 420 SSQSSVPLSS SRSTRQGGEV RRSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871070.2 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | M5VMU1 | 0.0 | M5VMU1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235007.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |