PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015871009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 478aa MW: 51200.7 Da PI: 8.9128 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 50 | 76 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ XP_015871009.1 50 PGVPNCVYYMRTGFCGYGSRCRYNHPR 76 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 6.3e-13 | 97 | 121 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ XP_015871009.1 97 EPVCQYYLKTGTCKFGASCKFHHPK 121 789********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8e-12 | 142 | 167 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ XP_015871009.1 142 GETECSYYLKTGQCKFGITCKFHHPQ 167 7789********************97 PP | |||||||
4 | zf-CCCH | 35 | 2.4e-11 | 299 | 325 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG CkyG++C+++H++ XP_015871009.1 299 PGEPECQYYIKTGDCKYGSSCRYHHPR 325 5799*********************96 PP | |||||||
5 | zf-CCCH | 34.9 | 2.6e-11 | 346 | 371 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C f++++G+Ck+G++CkF H++ XP_015871009.1 346 GVQVCTFYLQNGHCKFGSTCKFDHPM 371 5678********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.8E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-5 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-8 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 303 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 304 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 344 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 344 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-9 | 346 | 371 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-7 | 346 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 348 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MELYGRSPAR NGSNPVHQPE WSPVPAGGET GLEESMWQLG LSSESYPERP GVPNCVYYMR 60 TGFCGYGSRC RYNHPRDRAA VAAAVRATGE YPERVGEPVC QYYLKTGTCK FGASCKFHHP 120 KHGGGSLSQA PLNIYGYPLR PGETECSYYL KTGQCKFGIT CKFHHPQPAG TSVSASAPQF 180 YPTVQSPSVP MPEQYPGAST SLRVARPPLL PGSYVQGAYG PMLFPPGVVP LHGWSPYSAP 240 VSPVLSPGAA QPPVAATSLY GVTQLSSSSP ALARPFPSLP SSIGASSSSP KEQAFPERPG 300 EPECQYYIKT GDCKYGSSCR YHHPRDRVVP RTNCLLSPIG LPLRPGVQVC TFYLQNGHCK 360 FGSTCKFDHP MGNMRYNPSA SSLIDMPVTP YPVGNLLGTL APSSTSSELR PELISGSKKE 420 SYSTRMPSSA NTSSSSVGLI FSQTGSVSLS EVQLSSQSSV PLSSSRSTRQ GGEVRRSS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015871009.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868779.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015869584.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870642.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870644.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870658.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870708.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870771.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015871009.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A314XWJ5 | 0.0 | A0A314XWJ5_PRUYE; Zinc finger CCCH domain-containing protein 32 | ||||
STRING | XP_008235007.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |