PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870842.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 555aa    MW: 61849.4 Da    PI: 7.617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-1854100148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd ll   vk++ g+tWk+Ia++++ gRt+ qc +rwqk+l
   XP_015870842.1  54 KGGWTEEEDNLLTTIVKKFNGRTWKKIAAYIP-GRTDVQCFHRWQKVL 100
                      688*****************************.************986 PP
2Myb_DNA-binding60.63.5e-19106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+l++++v ++G ++W+tIa++++ gR +kqc++rw+++l
   XP_015870842.1 106 KGSWTKEEDDLIIRLVDKYGYKRWSTIAKYIP-GRIGKQCRERWHNHL 152
                      799*****************************.*************97 PP
3Myb_DNA-binding50.16.3e-16158200145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r+ WT+eE+  l+ +++ +G++ W+ Iar ++ gRt++ +k++w+
   XP_015870842.1 158 RDIWTEEEESALAYYHQIFGNK-WAEIARFLP-GRTDNAIKNHWN 200
                      567*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.94949100IPR017930Myb domain
SuperFamilySSF466898.61E-1952114IPR009057Homeodomain-like
SMARTSM007173.1E-1553102IPR001005SANT/Myb domain
PfamPF002494.0E-1654100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2256112IPR009057Homeodomain-like
CDDcd001673.74E-1357100No hitNo description
PROSITE profilePS5129431.794101156IPR017930Myb domain
SuperFamilySSF466892.93E-31103199IPR009057Homeodomain-like
SMARTSM007172.7E-17105154IPR001005SANT/Myb domain
PfamPF002492.0E-18106152IPR001005SANT/Myb domain
CDDcd001672.70E-16108152No hitNo description
Gene3DG3DSA:1.10.10.603.6E-26113158IPR009057Homeodomain-like
SMARTSM007172.0E-15157205IPR001005SANT/Myb domain
PROSITE profilePS5129417.364157207IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-20159206IPR009057Homeodomain-like
PfamPF002496.4E-13161200IPR001005SANT/Myb domain
CDDcd001671.33E-11161200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MMEKVKEEKE DFIVDSENEI GSSSCPLSEC NYASPAFGTG SQIGRRHGPT RRRKGGWTEE  60
EDNLLTTIVK KFNGRTWKKI AAYIPGRTDV QCFHRWQKVL NPDLVKGSWT KEEDDLIIRL  120
VDKYGYKRWS TIAKYIPGRI GKQCRERWHN HLDPVIKRDI WTEEEESALA YYHQIFGNKW  180
AEIARFLPGR TDNAIKNHWN CSLKRKSDLC SLDDGCQVHM CQTTSPDSSS CEISPACEKI  240
GMQRRSSDGI ISPTWELPLG DNACFMKIGL GNTLGQTTFS QEKTDKVVSL RSSEEGASGM  300
TNKINEMQVD NSAKDSSLVV SSSDVSLNAT ASTRLNGEVV LPVASGTSES PKRLNHYNPG  360
LVNLGVGNIP VNPHPSSLTR EFDENTGQVG NRKKSHEILV CTEETSHGCL RYEPLPQENL  420
GTPVGLKGSS STDQKSPSCY STPTERAQNL HVNYSSPESI LRFSAMTFTN TPSIIRKRKS  480
SAVYAKCSDV TSTPRWTVPS IQEIDINSQD FPNSKQGLIS FFHRPETSVA VKSLERCLEH  540
AFDVEKESAA VGIAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-66542066158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-66542066158MYB PROTO-ONCOGENE PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870842.20.0uncharacterized protein LOC107408008 isoform X2
TrEMBLA0A2I4FAN31e-163A0A2I4FAN3_JUGRE; uncharacterized protein LOC108997066 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-79myb domain protein 3r-5