PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015870836.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 345aa MW: 37732.2 Da PI: 6.8414 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 227.4 | 2.7e-70 | 118 | 273 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsst 89 g+++CqdCGnqakkdC h RCRtCCksrgf+C thvkstWvpaakrrerqqqla +++++++++ + ++skr+r +++++++l++t XP_015870836.1 118 GGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLAELQQQQQQQHqqqqqqqfRVDNSKRQR--ENQESASLACT 210 5789***************************************************999988887745554433333344444..558889999** PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +l++++s el ++P+ev+s+avfrcvrvs++dd ++++aYqtav+igGhvf+GiLydqG++ XP_015870836.1 211 RLPTTTSGLELGS-QFPTEVNSPAVFRCVRVSTMDDVDDQYAYQTAVNIGGHVFRGILYDQGPD 273 ****999977765.5***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.2E-68 | 120 | 273 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.9E-27 | 122 | 164 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.2E-26 | 224 | 272 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MAGFFCLGGG KEAPNNKQEE EEDQRVQQQQ GVGGGGNSLF LYRNEEIYNN NNNKGFEIWP 60 QYHQQQQNLS SYYSFGVGPS RIRSFNINND SSDESLRFGF TVMRPSGGLG GSGSGSGGGG 120 MNCQDCGNQA KKDCIHLRCR TCCKSRGFQC PTHVKSTWVP AAKRRERQQQ LAELQQQQQQ 180 QHQQQQQQQF RVDNSKRQRE NQESASLACT RLPTTTSGLE LGSQFPTEVN SPAVFRCVRV 240 STMDDVDDQY AYQTAVNIGG HVFRGILYDQ GPDGHYSTGG EGSSGRGGDD DGVQQLNLIT 300 GGTTTTSSSG THTGANPSSL LDPSLYPTPL NAFMAGTQFF PPPRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015870836.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870836.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_015876003.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9LQZ5 | 2e-88 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | W9SFH8 | 1e-127 | W9SFH8_9ROSA; Uncharacterized protein | ||||
STRING | XP_010105273.1 | 1e-128 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75520.1 | 1e-72 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|