PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870836.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SRS
Protein Properties Length: 345aa    MW: 37732.2 Da    PI: 6.8414
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.42.7e-701182733153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsst 89 
                      g+++CqdCGnqakkdC h RCRtCCksrgf+C thvkstWvpaakrrerqqqla +++++++++        + ++skr+r  +++++++l++t
  XP_015870836.1 118 GGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLAELQQQQQQQHqqqqqqqfRVDNSKRQR--ENQESASLACT 210
                     5789***************************************************999988887745554433333344444..558889999** PP

          DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +l++++s  el   ++P+ev+s+avfrcvrvs++dd ++++aYqtav+igGhvf+GiLydqG++
  XP_015870836.1 211 RLPTTTSGLELGS-QFPTEVNSPAVFRCVRVSTMDDVDDQYAYQTAVNIGGHVFRGILYDQGPD 273
                     ****999977765.5***********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.2E-68120273IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.9E-27122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-26224272IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGFFCLGGG KEAPNNKQEE EEDQRVQQQQ GVGGGGNSLF LYRNEEIYNN NNNKGFEIWP  60
QYHQQQQNLS SYYSFGVGPS RIRSFNINND SSDESLRFGF TVMRPSGGLG GSGSGSGGGG  120
MNCQDCGNQA KKDCIHLRCR TCCKSRGFQC PTHVKSTWVP AAKRRERQQQ LAELQQQQQQ  180
QHQQQQQQQF RVDNSKRQRE NQESASLACT RLPTTTSGLE LGSQFPTEVN SPAVFRCVRV  240
STMDDVDDQY AYQTAVNIGG HVFRGILYDQ GPDGHYSTGG EGSSGRGGDD DGVQQLNLIT  300
GGTTTTSSSG THTGANPSSL LDPSLYPTPL NAFMAGTQFF PPPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870836.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_015876003.10.0protein SHI RELATED SEQUENCE 1-like
SwissprotQ9LQZ52e-88SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLW9SFH81e-127W9SFH8_9ROSA; Uncharacterized protein
STRINGXP_010105273.11e-128(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-72SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]