PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015870833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 26811.1 Da PI: 8.9892 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.3e-20 | 48 | 96 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g XP_015870833.1 48 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 96 8*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.41E-18 | 47 | 104 | No hit | No description |
SMART | SM00380 | 6.2E-37 | 47 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.275 | 47 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-13 | 47 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-22 | 48 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 48 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MRRGGRGGGG GGGVGGRATD PASSRLRIEN KPIVGPDSNK SPLQEIRFRG VRKRPWGRFA 60 AEIRDPWKKT RVWLGTFDSA EDAARAYDAA ARSLRGPKAK TNFPLPANPH SGLTHIPLYH 120 QHEFHDDRVS SKIDVIQASR PTSSSLSSTV ESFSGPRVST REQPVRPVVV PRLTRRASNP 180 VPPDDDCHSD CDSSSSVVDD AAADCVLTSS SVQRILPFDL NLPPPMMMMD GPDFFGDDDL 240 KATALCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 47 | 113 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 11 | GGRGGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015870833.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870833.1 | 1e-180 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_015902520.1 | 1e-180 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 3e-43 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0V0HV08 | 3e-63 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | XP_008456400.1 | 3e-59 | (Cucumis melo) | ||||
STRING | XP_004143195.1 | 3e-59 | (Cucumis sativus) | ||||
STRING | XP_004172004.1 | 3e-59 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 5e-26 | ethylene responsive element binding factor 3 |