PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870831.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HB-other
Protein Properties Length: 496aa    MW: 56165.4 Da    PI: 8.8448
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870831.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.64.9e-192075257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    +kR+  t+ q+ +Le+++++++yp++e++  LA++lgLte+q++ WF+ rR k+kk
  XP_015870831.1 20 KKRRLKTPGQVMALEKFYNEHKYPTEEMKSALAEELGLTEKQISGWFCHRRLKDKK 75
                    89****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-21275IPR009057Homeodomain-like
PROSITE profilePS5007116.9411676IPR001356Homeobox domain
SMARTSM003898.9E-191880IPR001356Homeobox domain
SuperFamilySSF466899.84E-181883IPR009057Homeodomain-like
PfamPF000462.4E-162075IPR001356Homeobox domain
CDDcd000864.25E-172075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEELSEAHSE DNKVSQDNNK KRRLKTPGQV MALEKFYNEH KYPTEEMKSA LAEELGLTEK  60
QISGWFCHRR LKDKKLLRDE KFTNGRQDRS SGIIQDRGSG LGQDSCGSTK NAEYRHVDPR  120
EVESRRLYGH DFPTAELSHD QRSHYTERVS GVDNTSSESS SSLQDRLFSQ SDDPYDMETS  180
RYLKHDGVIA GANPKVSRNM GYKPSGYLKV KGEIENAAVT AVKRQLGRHY REDGPPLAVE  240
FEPLPPGAFE SPGDPGHERY YVENSVLPDS PDISGVKRQP SPSTRYEVYN SKVSSKDSYV  300
HEAPMMHVFE GQEIKSGNQS RKKSTYLNHT SSLPGRNSTL NTYDESGYNR NSRMSSKHGV  360
EGMISDSALK HHGQYSGKIS REQSVPWLDE DNNTSPKILQ RSEYSKLKPS VSKRYGHEMF  420
DMKDRRQSKI MAKAQEDIYN EEAKATKEKC SPVKVKMKPT NEMMAGKKVM VDCSQRDYGT  480
NSSFAPLPPR SHLVIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870831.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870829.10.0homeobox-DDT domain protein RLT1
TrEMBLA0A2P5FIL40.0A0A2P5FIL4_TREOI; Octamer-binding transcription factor
STRINGXP_010106869.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-80HB-other family protein