PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015870831.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HB-other | ||||||||
Protein Properties | Length: 496aa MW: 56165.4 Da PI: 8.8448 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 4.9e-19 | 20 | 75 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ q+ +Le+++++++yp++e++ LA++lgLte+q++ WF+ rR k+kk XP_015870831.1 20 KKRRLKTPGQVMALEKFYNEHKYPTEEMKSALAEELGLTEKQISGWFCHRRLKDKK 75 89****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 2 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.941 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-19 | 18 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-18 | 18 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-16 | 20 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.25E-17 | 20 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MEELSEAHSE DNKVSQDNNK KRRLKTPGQV MALEKFYNEH KYPTEEMKSA LAEELGLTEK 60 QISGWFCHRR LKDKKLLRDE KFTNGRQDRS SGIIQDRGSG LGQDSCGSTK NAEYRHVDPR 120 EVESRRLYGH DFPTAELSHD QRSHYTERVS GVDNTSSESS SSLQDRLFSQ SDDPYDMETS 180 RYLKHDGVIA GANPKVSRNM GYKPSGYLKV KGEIENAAVT AVKRQLGRHY REDGPPLAVE 240 FEPLPPGAFE SPGDPGHERY YVENSVLPDS PDISGVKRQP SPSTRYEVYN SKVSSKDSYV 300 HEAPMMHVFE GQEIKSGNQS RKKSTYLNHT SSLPGRNSTL NTYDESGYNR NSRMSSKHGV 360 EGMISDSALK HHGQYSGKIS REQSVPWLDE DNNTSPKILQ RSEYSKLKPS VSKRYGHEMF 420 DMKDRRQSKI MAKAQEDIYN EEAKATKEKC SPVKVKMKPT NEMMAGKKVM VDCSQRDYGT 480 NSSFAPLPPR SHLVIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 24 | KKRRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015870831.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870829.1 | 0.0 | homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A2P5FIL4 | 0.0 | A0A2P5FIL4_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010106869.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-80 | HB-other family protein |