PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870777.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23613.8 Da    PI: 9.8339
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.3e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++ey+s
  XP_015870777.1  9 KRIENHTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEYIS 59
                    79***********************************************86 PP
2K-box16.14.7e-0771105135
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreq 35 
                     yqk+sg +l+++++e +qq+l++Lk+ + +L+r +
  XP_015870777.1  71 YQKTSGIDLWQTHYEAMQQNLKQLKDINYKLRRDI 105
                     899****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.73161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-41160IPR002100Transcription factor, MADS-box
CDDcd002653.56E-42280No hitNo description
SuperFamilySSF554551.83E-38295IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGRGKIEIKR IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS TGKFHEYISP  60
STSTKKIFDL YQKTSGIDLW QTHYEAMQQN LKQLKDINYK LRRDISYIKQ YHKIKTQTET  120
CKKKVNSLRQ RHVNLMQSYQ AKCEDPPYGL VDDNDEDYES AVALANGASN LYAFRHQPHT  180
HTHPNIQNGV GFGSYDLHDL RLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16159159MEF2C
5f28_B2e-16159159MEF2C
5f28_C2e-16159159MEF2C
5f28_D2e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870777.11e-153floral homeotic protein PMADS 1-like
SwissprotQ003J21e-92TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2C9WF578e-94A0A2C9WF57_MANES; Uncharacterized protein
STRINGVIT_04s0023g02820.t014e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-59MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]