PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015870561.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 783aa MW: 90745.9 Da PI: 4.8699

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015870561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.9	1.4e-22	174	257	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC+a++++++ ++++w+v++++leHnH + XP_015870561.1 174 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCQAMIRLRLVESNRWRVDEVKLEHNHLF 257 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-20	174	257	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-28	379	472	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.903	665	701	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-6	676	703	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MTKVEGPKPK ETAKSQSQLV RAKLGSCTLT EGLVKLSAKT MTGDSTFTPT DHAMSPNPNL 60 EITIEECSQN SEHLLENEGN DLENDSEQLF EIEGDDQENE RDDTSDHLFE IEGNDHDNDR 120 DDADVQLFTI EGNDTEENRD DTTIVDAPND ASQQKVYLPP VVGMEFESYD DAYNYYNCYA 180 KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN SRRKETRTGC QAMIRLRLVE 240 SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDVGVKRKLE PTLDVEVRTI KLYRTPVADA 300 VGFGSSNLNE GETNNLVDRS RHLKLNEGDT QTIYNFFCRA QLSDPNFFYV MDLNDEGHLR 360 NMFWIDSRSR ATYGYFGDVV AFDTTCLSNN YAIPFVAFVG VNHHGQEVLL GCGFLVDETL 420 ETYIWLFRAW LTCMSGRPPQ TIITNQCKAL QSAIAEVFPR AHHRICLSDI VQSILENMGG 480 LQEYEAFQIV LFKTIYDSLK VDEFEMAWED MIQCFGIRDH DWLRSLYEDR ERWAPAYSKD 540 TYFAGLSNFL RGESRSSFFY GYLDEQTSLK EFFDIYDLVL DKKRRQEALD DFESRDLSPI 600 LKTRCSYELQ LSKLYTKNIF QKFQVEVVMM SSCFSITQVH TNGSIVTYMI KEREGEEIPR 660 DVRNFEVMYD KAGADVRCIC SCFNFKGYLC RHALCVLNYN GIEEIPYQYI LSRWRKDFRR 720 LYVPDLGSNN VDITNPVQWF DHLYRRGMQV VEEGMISQDH YMVAWQAFKE SLNKVRLVAD 780 KHV

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MTKVEGPKPK ETAKSQSQLV RAKLGSCTLT EGLVKLSAKT MTGDSTFTPT DHAMSPNPNL  60
EITIEECSQN SEHLLENEGN DLENDSEQLF EIEGDDQENE RDDTSDHLFE IEGNDHDNDR  120
DDADVQLFTI EGNDTEENRD DTTIVDAPND ASQQKVYLPP VVGMEFESYD DAYNYYNCYA  180
KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN SRRKETRTGC QAMIRLRLVE  240
SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDVGVKRKLE PTLDVEVRTI KLYRTPVADA  300
VGFGSSNLNE GETNNLVDRS RHLKLNEGDT QTIYNFFCRA QLSDPNFFYV MDLNDEGHLR  360
NMFWIDSRSR ATYGYFGDVV AFDTTCLSNN YAIPFVAFVG VNHHGQEVLL GCGFLVDETL  420
ETYIWLFRAW LTCMSGRPPQ TIITNQCKAL QSAIAEVFPR AHHRICLSDI VQSILENMGG  480
LQEYEAFQIV LFKTIYDSLK VDEFEMAWED MIQCFGIRDH DWLRSLYEDR ERWAPAYSKD  540
TYFAGLSNFL RGESRSSFFY GYLDEQTSLK EFFDIYDLVL DKKRRQEALD DFESRDLSPI  600
LKTRCSYELQ LSKLYTKNIF QKFQVEVVMM SSCFSITQVH TNGSIVTYMI KEREGEEIPR  660
DVRNFEVMYD KAGADVRCIC SCFNFKGYLC RHALCVLNYN GIEEIPYQYI LSRWRKDFRR  720
LYVPDLGSNN VDITNPVQWF DHLYRRGMQV VEEGMISQDH YMVAWQAFKE SLNKVRLVAD  780
KHV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015870561.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015870561.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	M5XGN7	0.0	M5XGN7_PRUPE; Uncharacterized protein
STRING	EMJ18225	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]