PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870329.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 346aa    MW: 38678.5 Da    PI: 8.3856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-061972101326
                     S--TTTTT-SS-SS CS
         zf-CCCH  13 GtCkyGdrCkFaHg 26 
                     G C+ G++C+FaHg
  XP_015870329.1 197 GLCRNGENCNFAHG 210
                     89***********8 PP

2zf-CCCH35.91.2e-11304330127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ +   G C+ G++C+FaHg+
  XP_015870329.1 304 WKTKLCKKWETRGLCSLGEKCHFAHGQ 330
                     8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-8185218IPR000571Zinc finger, CCCH-type
SMARTSM003563.2185211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.042185212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5194216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-15300333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-10302333IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-6303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962303331IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9304330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSFPDLRSPF MPSLGPQSAC SGASVGLRPH QFPINDDFQG QGPPFKRLKT SRSNSLSEIH  60
SNSLFYPSMS NHSLINCWPQ FPTKNEDQHP QFEHQILPPL KKPRISEECR SNCLPCPPVN  120
NGMSVDDIGF WIQNSQFEHP PPPFKKPRIS EETQSNSLRY PPLASSINPP PSGPSSSGIR  180
TDTIFFKPSV SAKFKVGLCR NGENCNFAHG IEDMRQPPPN SQELAEDRLP LGNCDGDQEL  240
IHWMKRCSFI HEHPAKVGDK LGGFSQSRVL GTVNGRGCNG SEGNRSVNNT SSDSLRVNSN  300
PAYWKTKLCK KWETRGLCSL GEKCHFAHGQ EELLVLRWTN RSRSQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870329.10.0zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A314ZJY73e-63A0A314ZJY7_PRUYE; Zinc finger CCCH domain-containing protein 39
STRINGXP_008242734.16e-65(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-28C3H family protein