PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015870329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 346aa MW: 38678.5 Da PI: 8.3856 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5e-06 | 197 | 210 | 13 | 26 |
S--TTTTT-SS-SS CS zf-CCCH 13 GtCkyGdrCkFaHg 26 G C+ G++C+FaHg XP_015870329.1 197 GLCRNGENCNFAHG 210 89***********8 PP | |||||||
2 | zf-CCCH | 35.9 | 1.2e-11 | 304 | 330 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + G C+ G++C+FaHg+ XP_015870329.1 304 WKTKLCKKWETRGLCSLGEKCHFAHGQ 330 8************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-8 | 185 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2 | 185 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.042 | 185 | 212 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-5 | 194 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-15 | 300 | 333 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-10 | 302 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-6 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-9 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MSFPDLRSPF MPSLGPQSAC SGASVGLRPH QFPINDDFQG QGPPFKRLKT SRSNSLSEIH 60 SNSLFYPSMS NHSLINCWPQ FPTKNEDQHP QFEHQILPPL KKPRISEECR SNCLPCPPVN 120 NGMSVDDIGF WIQNSQFEHP PPPFKKPRIS EETQSNSLRY PPLASSINPP PSGPSSSGIR 180 TDTIFFKPSV SAKFKVGLCR NGENCNFAHG IEDMRQPPPN SQELAEDRLP LGNCDGDQEL 240 IHWMKRCSFI HEHPAKVGDK LGGFSQSRVL GTVNGRGCNG SEGNRSVNNT SSDSLRVNSN 300 PAYWKTKLCK KWETRGLCSL GEKCHFAHGQ EELLVLRWTN RSRSQE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015870329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870329.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A314ZJY7 | 3e-63 | A0A314ZJY7_PRUYE; Zinc finger CCCH domain-containing protein 39 | ||||
STRING | XP_008242734.1 | 6e-65 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-28 | C3H family protein |