PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015870158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 229aa MW: 25111 Da PI: 6.6026 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 176.6 | 2.4e-55 | 63 | 159 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvsefisf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre+eg XP_015870158.1 63 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEFISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTIYLHRYREMEG 157 69********************************************************************************************* PP NF-YB 96 ek 97 ++ XP_015870158.1 158 DR 159 97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.7E-52 | 58 | 164 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.24E-39 | 66 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-26 | 69 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.2E-16 | 97 | 115 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 100 | 116 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.2E-16 | 116 | 134 | No hit | No description |
PRINTS | PR00615 | 1.2E-16 | 135 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MERGGFHGYR KLPNTSSGLK LSDISARLSE INSSDNNNNQ TSAVAGAAAA TSAVAGDDNE 60 CTVREQDRFM PIANVIRIMR KILPPHAKIS DDAKETIQEC VSEFISFITG EANERCQREQ 120 RKTITAEDVL WAMSKLGFDD YIEPLTIYLH RYREMEGDRG TMRGEPLLKR TTTTTVEYAA 180 GSLGVAAFAP AFHIGHHHHH GFFGYIKEAS SGGSSQAALA NGETNAQFK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-62 | 62 | 154 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015870158.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870158.1 | 1e-173 | nuclear transcription factor Y subunit B-6-like | ||||
Swissprot | Q84W66 | 4e-79 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | D7SZ49 | 1e-106 | D7SZ49_VITVI; LEC1 | ||||
STRING | VIT_00s0956g00020.t01 | 1e-107 | (Vitis vinifera) | ||||
STRING | XP_004295333.1 | 1e-107 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.1 | 5e-78 | nuclear factor Y, subunit B6 |