PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870078.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 377aa    MW: 40878.2 Da    PI: 8.192
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.9e-11427226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k elC++++r G C+yG rCkF H+
  XP_015870078.1  4 KKELCKNYQR-GSCQYGQRCKFLHV 27
                    78********.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.986229IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6326IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPIKKELCKN YQRGSCQYGQ RCKFLHVTQQ QPKSNIFGGG AQSGSYGQQQ KSNPYGFGVQ  60
NSSQSKGSTD YGSKPNNQFK PFENKWTRFS PIPNTGAPSA RQSENQTQAT NHKCTDPESC  120
RRIVVEDFEN ERPLWKLTCY GHLKNAPCDI IGDISYEELR AAAYDDAKRG LSLQSIVERE  180
RNLLSSKLVE FENLCKPHAV APSSTLPDQK PFSGTSSNAF SSFGQLGSSL NMGPPAPLNN  240
GFGQLNSSAP SRQISSAFGT KNMPSENAGL FGSQFPASST ITGFSSNGAL RESNPFSPSP  300
SSAQFLRTTN NQSPILSMGL DYTSNANAPA QVAMGVQLAT NMQKEDISGD VSIWSKNKWN  360
PGEVPEEAPP DAFVDAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869713.10.0zinc finger CCCH domain-containing protein 16-like isoform X2
RefseqXP_015869719.10.0zinc finger CCCH domain-containing protein 16-like isoform X2
RefseqXP_015870019.10.0zinc finger CCCH domain-containing protein 16-like isoform X2
RefseqXP_015870073.10.0zinc finger CCCH domain-containing protein 16-like isoform X2
RefseqXP_015870078.10.0zinc finger CCCH domain-containing protein 16-like isoform X2
RefseqXP_015870082.10.0zinc finger CCCH domain-containing protein 16-like isoform X2
TrEMBLA0A251QQG51e-149A0A251QQG5_PRUPE; Uncharacterized protein
STRINGXP_008224558.11e-144(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-76C3H family protein