PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015870078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 377aa MW: 40878.2 Da PI: 8.192 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.9e-11 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k elC++++r G C+yG rCkF H+ XP_015870078.1 4 KKELCKNYQR-GSCQYGQRCKFLHV 27 78********.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.986 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-5 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-9 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-8 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MPIKKELCKN YQRGSCQYGQ RCKFLHVTQQ QPKSNIFGGG AQSGSYGQQQ KSNPYGFGVQ 60 NSSQSKGSTD YGSKPNNQFK PFENKWTRFS PIPNTGAPSA RQSENQTQAT NHKCTDPESC 120 RRIVVEDFEN ERPLWKLTCY GHLKNAPCDI IGDISYEELR AAAYDDAKRG LSLQSIVERE 180 RNLLSSKLVE FENLCKPHAV APSSTLPDQK PFSGTSSNAF SSFGQLGSSL NMGPPAPLNN 240 GFGQLNSSAP SRQISSAFGT KNMPSENAGL FGSQFPASST ITGFSSNGAL RESNPFSPSP 300 SSAQFLRTTN NQSPILSMGL DYTSNANAPA QVAMGVQLAT NMQKEDISGD VSIWSKNKWN 360 PGEVPEEAPP DAFVDAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015870078.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869713.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like isoform X2 | ||||
Refseq | XP_015869719.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like isoform X2 | ||||
Refseq | XP_015870019.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like isoform X2 | ||||
Refseq | XP_015870073.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like isoform X2 | ||||
Refseq | XP_015870078.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like isoform X2 | ||||
Refseq | XP_015870082.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like isoform X2 | ||||
TrEMBL | A0A251QQG5 | 1e-149 | A0A251QQG5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224558.1 | 1e-144 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4600 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 1e-76 | C3H family protein |