PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015869952.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 511aa MW: 57267.4 Da PI: 8.4025

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015869952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.7	4.8e-07	383	430	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E lvd++ ++G g+W+ I r + Rt+ +++++w+++l XP_015869952.1 383 WTLTEVMNLVDGISEYGVGRWTDIKRLLFaasAYRTPIDLRDKWRNLL 430 ******************************99**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-10	372	434	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.093	375	434	IPR017930	Myb domain
SuperFamily	SSF46689	2.42E-15	377	453	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-7	379	432	IPR001005	SANT/Myb domain
CDD	cd11660	2.88E-17	381	431	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MDREAHLRKK FSNAKSQRVK TDESLTPALE DETVEHLLAE PKNENVSVDG VLYFGEQNAG 60 KCLGIEDFSC EFEYGLNPYR GGLHSSTARE EEDDLALGVL DGLLDEVDEV EDLHATDGLA 120 SPCEDFLLDI DFAGKVSVLA PGLCQGSHSR NPSSESQSPG LSGSSNSAIG ISDSSTVTVQ 180 DFEYKNDSLN KTEKHGLQAA VRRKKRCRTP LQGTCLDSQD FKEFDDDENP LLSDLLLSNQ 240 KGKSSIEACK VGSFLREKRL RKPTQRYIEE FSNKKSKYLK GRGKFSSGDA VTANDKGLKM 300 RSHGDLHNVR PKTLSAVSEE ELLSGTKIQE VPLVRGKRGR PKKHVSVPQI EPDEEHFTSE 360 SEDDSVTKRR CKSHDRRKHQ RMWTLTEVMN LVDGISEYGV GRWTDIKRLL FAASAYRTPI 420 DLRDKWRNLL RASCAHKLKK KEMEERQGHA VRPLPKSLLR RVRELAKIHP YPRERGVKSI 480 GEDDPSTLPT SSKGAPLSVG RKNNVRRKNC T

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MDREAHLRKK FSNAKSQRVK TDESLTPALE DETVEHLLAE PKNENVSVDG VLYFGEQNAG  60
KCLGIEDFSC EFEYGLNPYR GGLHSSTARE EEDDLALGVL DGLLDEVDEV EDLHATDGLA  120
SPCEDFLLDI DFAGKVSVLA PGLCQGSHSR NPSSESQSPG LSGSSNSAIG ISDSSTVTVQ  180
DFEYKNDSLN KTEKHGLQAA VRRKKRCRTP LQGTCLDSQD FKEFDDDENP LLSDLLLSNQ  240
KGKSSIEACK VGSFLREKRL RKPTQRYIEE FSNKKSKYLK GRGKFSSGDA VTANDKGLKM  300
RSHGDLHNVR PKTLSAVSEE ELLSGTKIQE VPLVRGKRGR PKKHVSVPQI EPDEEHFTSE  360
SEDDSVTKRR CKSHDRRKHQ RMWTLTEVMN LVDGISEYGV GRWTDIKRLL FAASAYRTPI  420
DLRDKWRNLL RASCAHKLKK KEMEERQGHA VRPLPKSLLR RVRELAKIHP YPRERGVKSI  480
GEDDPSTLPT SSKGAPLSVG RKNNVRRKNC T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015869952.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015869952.1	0.0	uncharacterized protein LOC107407213
TrEMBL	W9S527	0.0	W9S527_9ROSA; Telomere repeat-binding protein 4
STRING	XP_010107511.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4716	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-23	TRF-like 6