PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015869655.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 238aa MW: 27048.4 Da PI: 6.3083

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015869655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.5	2.8e-10	55	101	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fY +YAkevGFsvr s++k+ k +e+++++ vC keg ++ ++++ XP_015869655.1 55 EFYIKYAKEVGFSVRSSSTKRCKGANEVVRKEVVCFKEGVSSIKDEH 101 6***************************************9998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-8	55	101	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSVEQLEANS DCRRVEDISL LSHSKSVDDV YIPQVAENCK PKVGQEFESI DGAYEFYIKY 60 AKEVGFSVRS SSTKRCKGAN EVVRKEVVCF KEGVSSIKDE HSHPLSTPRR VHLLRSHRSV 120 SEAKKSLTLQ FSAANVPTHQ QISILQFEAG GIENIGCTKK DIYNHEAKVR NELRGQDVEL 180 LMEYFLTEQE NDPCFFFKID VDDDGKLKHC FWTDSVSRRA YGCFGDVVVF ATTYNTNQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015869655.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015869655.1	1e-178	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4URE3	6e-70	V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006428864.1	1e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-27	FAR1-related sequence 5