PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015869585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 47481.7 Da PI: 9.1689 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 15 | 41 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ XP_015869585.1 15 PGVPNCVYYMRTGFCGYGSRCRYNHPR 41 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.2 | 5.7e-13 | 62 | 86 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ XP_015869585.1 62 EPVCQYYLKTGTCKFGASCKFHHPK 86 789********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.3e-12 | 107 | 132 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ XP_015869585.1 107 GETECSYYLKTGQCKFGITCKFHHPQ 132 7789********************97 PP | |||||||
4 | zf-CCCH | 35.1 | 2.2e-11 | 264 | 290 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG CkyG++C+++H++ XP_015869585.1 264 PGEPECQYYIKTGDCKYGSSCRYHHPR 290 5799*********************96 PP | |||||||
5 | zf-CCCH | 35 | 2.4e-11 | 311 | 336 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C f++++G+Ck+G++CkF H++ XP_015869585.1 311 GVQVCTFYLQNGHCKFGSTCKFDHPM 336 5678********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.22 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 16 | 41 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 18 | 43 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 20 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 62 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 62 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 64 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 111 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-8 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 268 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 269 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-9 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-7 | 311 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 313 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MWQLGLSSES YPERPGVPNC VYYMRTGFCG YGSRCRYNHP RDRAAVAAAV RATGEYPERV 60 GEPVCQYYLK TGTCKFGASC KFHHPKHGGG SLSQAPLNIY GYPLRPGETE CSYYLKTGQC 120 KFGITCKFHH PQPAGTSVSA SAPQFYPTVQ SPSVPMPEQY PGASTSLRVA RPPLLPGSYV 180 QGAYGPMLFP PGVVPLHGWS PYSAPVSPVL SPGAAQPPVA ATSLYGVTQL SSSSPALARP 240 FPSLPSSIGA SSSSPKEQAF PERPGEPECQ YYIKTGDCKY GSSCRYHHPR DRVVPRTNCL 300 LSPIGLPLRP GVQVCTFYLQ NGHCKFGSTC KFDHPMGNMR YNPSASSLID MPVTPYPVGN 360 LLGTLAPSST SSELRPELIS GSKKESYSTR MPSSANTSSS SVGLIFSQTG SVSLSEVQLS 420 SQSSVPLSSS RSTRQGGEVR RSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015869585.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868779.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015869584.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870642.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870644.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870658.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870708.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015870771.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Refseq | XP_015871009.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | M5VMU1 | 0.0 | M5VMU1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235007.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |