PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015869323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 548aa MW: 61691.2 Da PI: 6.6216 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 447.8 | 7e-137 | 178 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+++L++cA+avs++d +l + l+++l+ ++s +g+p+qRl ay++e+L arl++s+s++ykal+++e + sse l+++++++e++P++kf++ XP_015869323.1 178 LKQVLISCAKAVSDHDISLSRVLMNELRRMVSVSGEPIQRLGAYMLEGLVARLSSSGSNIYKALRCKEPA---SSELLSYMHILYELCPYFKFGY 269 5799*****************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg++++ s + l+ +g++L+ +Ae++gvpfef++ +a + d XP_015869323.1 270 MSANGAIAEAMKDENRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSVSAyaRGGGLNIVGKKLSALAESFGVPFEFHA-AAMSGCD 363 ******************************************************888899999************************.8999*** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++l++L v+pgEalaVn+++ lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s+++ lpr +eri XP_015869323.1 364 VQLKNLGVRPGEALAVNFAFTLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYMAMFESIDVALPRILKERI 458 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+re+vn++aceg er+erhe l+kWr r+++aGF+p+pls+ +++++k+ll ++ s+ yr+ee++g+l+lgW++r Lv+++aW+ XP_015869323.1 459 NVEQHCLAREVVNIIACEGIERVERHELLGKWRLRFRMAGFTPYPLSSLVNATIKTLLVNYCSK-YRLEERDGALYLGWMNRDLVAACAWK 548 **************************************************************88.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.815 | 152 | 529 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-134 | 178 | 548 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MQASQQQIRS SRMSNKLFYR PIKEEEYCLP QYQTLDHKLC YNDSSQSTHF FPQISRDLYC 60 TLESSSANGS YNIYNSPSTV SFSPNGSPMS QQDSHSYPPD QLQSPENTYG SPISGSCITD 120 DMSDFKYKLK ELESVMLGND FNIIDNYDNV FHNGTGNILQ QEIDDWGQIV QSISKRDLKQ 180 VLISCAKAVS DHDISLSRVL MNELRRMVSV SGEPIQRLGA YMLEGLVARL SSSGSNIYKA 240 LRCKEPASSE LLSYMHILYE LCPYFKFGYM SANGAIAEAM KDENRVHIID FQIAQGSQWI 300 TLIQAFAARP GGPPHIRITG IDDSVSAYAR GGGLNIVGKK LSALAESFGV PFEFHAAAMS 360 GCDVQLKNLG VRPGEALAVN FAFTLHHMPD ESVSTQNHRD RLLRLVKSLS PKVVTLVEQE 420 SNTNTAAFFP RFLETLDYYM AMFESIDVAL PRILKERINV EQHCLAREVV NIIACEGIER 480 VERHELLGKW RLRFRMAGFT PYPLSSLVNA TIKTLLVNYC SKYRLEERDG ALYLGWMNRD 540 LVAACAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-62 | 180 | 548 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015869323.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869322.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_015869323.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_015881043.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_015881044.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | M5WSC8 | 0.0 | M5WSC8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16717 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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