PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869191.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 362aa    MW: 40988.6 Da    PI: 6.7478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10185231455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A++++k+Lq
  XP_015869191.1 185 DHVIAERKRREKLTQRFIALSAVLPGL-----KKMDKASVLGDAIRFVKQLQ 231
                     6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.195181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-15185243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-15186242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-11186235No hitNo description
SMARTSM003531.9E-13187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEIPLAKWLS AAELEVKDST FLNQYQMDNL HNSDDDLNFQ SYTSEGHSYY PKNDHNLVNF  60
PFEIPQTGTE SPPNKPLKSN SWSSCTTEYT STKASSSSSP HLISFQNSSS PPPPPATAEQ  120
YHGLDCTIKP KNELDYEESM ILIPPFLSDL DHSFQTQKYY CLQKFGHSVK RPFGAMSRSP  180
LHAQDHVIAE RKRREKLTQR FIALSAVLPG LKKMDKASVL GDAIRFVKQL QERVKTLEEQ  240
AAKSAGESRI IVKRTKVLVD DHHHEISSSL DESCNDKPLP EVEAKVSGKD VLIRIYCEKH  300
KGCLVNILRE IEKLHFTVVD SSVLQFGNST LDITIVAQMD VEFCMKVKDL VSYLRQALLQ  360
FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13185240863Transcription factor MYC2
5gnj_B7e-13185240863Transcription factor MYC2
5gnj_E7e-13185240863Transcription factor MYC2
5gnj_F7e-13185240863Transcription factor MYC2
5gnj_G7e-13185240863Transcription factor MYC2
5gnj_I7e-13185240863Transcription factor MYC2
5gnj_M7e-13185240863Transcription factor MYC2
5gnj_N7e-13185240863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869191.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869191.10.0transcription factor bHLH25-like
SwissprotQ9T0723e-64BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2N9J9N11e-117A0A2N9J9N1_FAGSY; Uncharacterized protein
TrEMBLA0A2P5FHA11e-117A0A2P5FHA1_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008383359.11e-114(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-66bHLH family protein