PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015869183.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 489aa MW: 53289 Da PI: 6.5025

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015869183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.8e-38	119	179	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s +tkfCy+nny+++qPryfCk+C+ryWt+GG++rnvPvG+grr+nk+ss XP_015869183.1 119 PDKVLPCPRCNSLETKFCYFNNYNVNQPRYFCKNCQRYWTAGGTIRNVPVGAGRRRNKHSS 179 78999*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	108	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-31	120	177	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.472	123	177	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	125	161	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MSGSQLGDPA IKLFGTNIPV PESGFPVGSV HSSGFRSWVP PSAVPLVMDE CSEAKKAEVG 60 DPSVEKFCKQ DKLSELDNGK QTGFQIHGHR KENEVNHNSE DDKGAGCDKS GKEKALKKPD 120 KVLPCPRCNS LETKFCYFNN YNVNQPRYFC KNCQRYWTAG GTIRNVPVGA GRRRNKHSSP 180 QYHQTVAHAD AAPVTQGDTL NSDNHHHPSS IIIPASERPV NGMGNSLEFG TDAPLCESMA 240 TVLNLKDHNR SEISSAAVGD NCEEPSSSTS SLTDTSPLEN EYSGKENDGS NPTHPIQYYP 300 VPQWTYPWNP GWSFMTVGPD SSNTNHPYMG SLPMMAVPGF CAPNITFQLL PASCWGYMPS 360 WEARKLVTPL HGSTENLIPS SSTRNTGCSG SPTLGKHSRD TTLQAEDQTE QCLWVPKTLR 420 IDDPDEAAKS SIWSTLGIKP DKNESSVRDG LFKALPNKSG ANSHTSDADQ VLQSNPAAFS 480 RSQSFKENT

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MSGSQLGDPA IKLFGTNIPV PESGFPVGSV HSSGFRSWVP PSAVPLVMDE CSEAKKAEVG  60
DPSVEKFCKQ DKLSELDNGK QTGFQIHGHR KENEVNHNSE DDKGAGCDKS GKEKALKKPD  120
KVLPCPRCNS LETKFCYFNN YNVNQPRYFC KNCQRYWTAG GTIRNVPVGA GRRRNKHSSP  180
QYHQTVAHAD AAPVTQGDTL NSDNHHHPSS IIIPASERPV NGMGNSLEFG TDAPLCESMA  240
TVLNLKDHNR SEISSAAVGD NCEEPSSSTS SLTDTSPLEN EYSGKENDGS NPTHPIQYYP  300
VPQWTYPWNP GWSFMTVGPD SSNTNHPYMG SLPMMAVPGF CAPNITFQLL PASCWGYMPS  360
WEARKLVTPL HGSTENLIPS SSTRNTGCSG SPTLGKHSRD TTLQAEDQTE QCLWVPKTLR  420
IDDPDEAAKS SIWSTLGIKP DKNESSVRDG LFKALPNKSG ANSHTSDADQ VLQSNPAAFS  480
RSQSFKENT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015869183.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015869183.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2P5D0M7	0.0	A0A2P5D0M7_PARAD; Zinc finger, Dof-type
STRING	XP_010086689.1	1e-161	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-75	cycling DOF factor 2