PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868862.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 203aa    MW: 22089.7 Da    PI: 4.7055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-183685255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++ a++kl+g
  XP_015868862.1 36 NFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSTEAALAYDDAARKLYG 85
                    69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-133585IPR001471AP2/ERF domain
CDDcd000183.80E-303595No hitNo description
SMARTSM003801.3E-343699IPR001471AP2/ERF domain
PROSITE profilePS5103221.3113693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-303694IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-213694IPR016177DNA-binding domain
PRINTSPR003671.9E-93748IPR001471AP2/ERF domain
PRINTSPR003671.9E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDKGEKQVVV VTKPIMGRSR KGCMKGKGGP ENALCNFRGV RQRTWGKWVA EIREPNRGAR  60
LWLGTFNTST EAALAYDDAA RKLYGPYAKL NLPDHSPPPP PPINNNNSTT TSDCTFSSDP  120
LAASTVSFEG DEAMASSVFV GDAASMFGGG FNNNVCDGLW GSPVMNWPET CFENDCVEMN  180
DVGVFLGSEN FMDRDGLQPS WSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-173693260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868862.11e-150dehydration-responsive element-binding protein 2G-like
RefseqXP_015882018.11e-150dehydration-responsive element-binding protein 2G
TrEMBLA0A498IH692e-56A0A498IH69_MALDO; Uncharacterized protein
STRINGXP_008389032.11e-57(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-43ERF family protein