PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015868688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 588aa MW: 65906.5 Da PI: 4.7238 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 444.6 | 6.7e-136 | 219 | 588 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lLl+cA a+s+g+ e+a ++++l++l+s +gdp qR+aay++e+Laar+a s++ lykal+++e + s+++laa+++++ev+P++kf+++ XP_015868688.1 219 RRLLLDCAGAISEGNIEEALMMINELRQLVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---STDRLAAMQILFEVCPCFKFGFM 310 589*****************************************************************9...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 taN aI ea++ e+rvHiiDfdi+qG Q+++Llq+La+ p++p +lR+Tgv++pes+ s l+ +g+rL+k+Ae l+vpfef++ v +r++ + XP_015868688.1 311 TANGAIIEAFKDEKRVHIIDFDINQGSQYITLLQTLANEPGKPSRLRLTGVDDPESVqrSVGGLKMIGQRLEKLAEVLEVPFEFEA-VPSRTSLV 404 *******************************************************9989999************************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++L++kpgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v++veq++++n+++F+ rf+ea +yysa+fdsl+a+lpres++r++ XP_015868688.1 405 TPSMLNLKPGEALIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTIVEQDVNTNTAPFFPRFVEAYNYYSAVFDSLDATLPRESQDRMN 499 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vEr++l+r+ivn+vaceg+er+er e ++kWr+r+ +aGF++ p+s+++ + ++ +r++ ++ y+v++e g+l +gW+d++L+++SaWr XP_015868688.1 500 VERQCLARDIVNIVACEGEERIERYEVAGKWRARMAMAGFTSCPMSTNVIDLIRKQIRQYCDR-YKVKQEVGALHFGWEDKTLIVASAWR 588 *************************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.346 | 192 | 569 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-133 | 219 | 588 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MSLVRPAELS ATAYRNPKLY SLKGSNDGSG LSTQIFGSDK RKTMYVTDSY CTESYEKYFV 60 DSPSDEVLQP SCSSISGISS NNPEGPSCYE LRTGSVSPLT PQNPYSASIV SMRHRDAYKS 120 NFESDHLESQ SPNLGEFDEN KMRLKLQELE RALLDDNDDE DEEDMFGSGQ SMEVDGDWVD 180 PVQNEMLHDS PKESSSSDSN ISSISSSKEM SQVSPRTPRR LLLDCAGAIS EGNIEEALMM 240 INELRQLVSI QGDPPQRIAA YMVEGLAARM AASGKFLYKA LKCKEPPSTD RLAAMQILFE 300 VCPCFKFGFM TANGAIIEAF KDEKRVHIID FDINQGSQYI TLLQTLANEP GKPSRLRLTG 360 VDDPESVQRS VGGLKMIGQR LEKLAEVLEV PFEFEAVPSR TSLVTPSMLN LKPGEALIVN 420 FAFQLHHMPD ESVSTVNQRD QLLRMVKSLN PKLVTIVEQD VNTNTAPFFP RFVEAYNYYS 480 AVFDSLDATL PRESQDRMNV ERQCLARDIV NIVACEGEER IERYEVAGKW RARMAMAGFT 540 SCPMSTNVID LIRKQIRQYC DRYKVKQEVG ALHFGWEDKT LIVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-65 | 225 | 587 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-65 | 225 | 587 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-65 | 225 | 587 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015868688.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868688.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_015868689.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_015868690.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_015868691.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2P5FPJ1 | 0.0 | A0A2P5FPJ1_TREOI; GRAS transcription factor | ||||
STRING | XP_010104285.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4988 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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