PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015868612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 45104.1 Da PI: 7.6835 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.4 | 1.2e-08 | 136 | 156 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ ++r G C++Gd+C FaHg XP_015868612.1 136 VCPEYRR-GGCSRGDSCEFAHG 156 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.0E-5 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-6 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-6 | 136 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 166 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.287 | 166 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MSSSVCSDHH HHHHQLFPSS KKTLLLRDID IPPRKLLLTR RAHQDPAAEM YSNSPRFSSA 60 EETLLQKFLP FNNSSAENDD DDSDDPYSSD HFRMYEFKIR RCTRSRSHDW TDCPFVHPGE 120 KARRRDPRRH HYSGTVCPEY RRGGCSRGDS CEFAHGVFEC WLHPARYRTE ACKDGKNCKR 180 KVCFFAHTPR QLRVLPPSLH SQTSSPEISP VGYKNKYLSH LSPTAAAAAA AGSNHCCMFC 240 CHSVTSSPTS TLLGMCHLSP PLSPPLSPAA KHGGFSPVSR YGLDRMHHGG GGGGGVNVSY 300 KDVLTDLMCS LEAMNFSETS PVSSATNYHQ NLPWIDVSFN NDDQQQQFIL SPSTPNPSGS 360 GNFFGGDCSS SNKSFNNNNI DHKQLNVNNS GSCSDPDLGW VNELLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015868612.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868612.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like isoform X2 | ||||
Refseq | XP_015868614.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like isoform X1 | ||||
Refseq | XP_015870256.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Refseq | XP_015872308.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Refseq | XP_024925072.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like isoform X1 | ||||
Swissprot | Q9ZWA1 | 4e-95 | C3H2_ARATH; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2P5DNI4 | 1e-157 | A0A2P5DNI4_TREOI; Zinc finger, CCCH-type | ||||
STRING | POPTR_0017s04510.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 2e-79 | C3H family protein |
Publications ? help Back to Top | |||
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