PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868612.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 406aa    MW: 45104.1 Da    PI: 7.6835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08136156526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ ++r G C++Gd+C FaHg
  XP_015868612.1 136 VCPEYRR-GGCSRGDSCEFAHG 156
                     7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-5131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6132158IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6136156IPR000571Zinc finger, CCCH-type
SMARTSM003562.4166189IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287166190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSSSVCSDHH HHHHQLFPSS KKTLLLRDID IPPRKLLLTR RAHQDPAAEM YSNSPRFSSA  60
EETLLQKFLP FNNSSAENDD DDSDDPYSSD HFRMYEFKIR RCTRSRSHDW TDCPFVHPGE  120
KARRRDPRRH HYSGTVCPEY RRGGCSRGDS CEFAHGVFEC WLHPARYRTE ACKDGKNCKR  180
KVCFFAHTPR QLRVLPPSLH SQTSSPEISP VGYKNKYLSH LSPTAAAAAA AGSNHCCMFC  240
CHSVTSSPTS TLLGMCHLSP PLSPPLSPAA KHGGFSPVSR YGLDRMHHGG GGGGGVNVSY  300
KDVLTDLMCS LEAMNFSETS PVSSATNYHQ NLPWIDVSFN NDDQQQQFIL SPSTPNPSGS  360
GNFFGGDCSS SNKSFNNNNI DHKQLNVNNS GSCSDPDLGW VNELLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868612.10.0zinc finger CCCH domain-containing protein 2-like isoform X2
RefseqXP_015868614.10.0zinc finger CCCH domain-containing protein 2-like isoform X1
RefseqXP_015870256.10.0zinc finger CCCH domain-containing protein 2-like
RefseqXP_015872308.10.0zinc finger CCCH domain-containing protein 2-like
RefseqXP_024925072.10.0zinc finger CCCH domain-containing protein 2-like isoform X1
SwissprotQ9ZWA14e-95C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2P5DNI41e-157A0A2P5DNI4_TREOI; Zinc finger, CCCH-type
STRINGPOPTR_0017s04510.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-79C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]