PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868481.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 388aa    MW: 42481 Da    PI: 5.5975
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-061657439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r+C+++ +   + +C+ ++ +lC  C   +H        H++
  XP_015868481.1 16 RVCDTCRSAACTVYCRADSAYLCTGCDARIHAAnrvasrHER 57
                    79******99*********************55567777765 PP
2zf-B_box28.14.3e-0958103342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++ + C+ +   lC  C   +H+       H +vp+
  XP_015868481.1  58 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHHRVPI 103
                     689*****************************66899999877775 PP
3CCT70.34.8e-24319362144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_015868481.1 319 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 362
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1681360IPR000315B-box-type zinc finger
SMARTSM003365.9E-91360IPR000315B-box-type zinc finger
CDDcd000211.59E-71660No hitNo description
PROSITE profilePS5011911.09256103IPR000315B-box-type zinc finger
PfamPF006433.7E-757103IPR000315B-box-type zinc finger
CDDcd000213.84E-959103No hitNo description
SMARTSM003361.2E-861103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648319361IPR010402CCT domain
PfamPF062037.6E-18319361IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMEEESSDAG ASGWARVCDT CRSAACTVYC RADSAYLCTG CDARIHAANR VASRHERVWV  60
CEACERAPAA FLCKADAASL CTACDADIHS ANPLARRHHR VPILPISGCL YGPPATNPSG  120
SLTATAAGGD TADGFLGDET IDEEDEDEAA SWLLLNPVKN SNGNNNNNNH GNGFLFGGDA  180
DEYLDFAEYN SCGDNQFADP YNQQQQQKQQ HQQHYVVPQQ KNYGGGDSIV PVQYGEGKTH  240
QLQQQGYQLG LEYESSKAAH SYNGSTSYSV SVSSMDVGVV PDSTMSDISI SHPRPPKGTI  300
DLFSGPPIQM PSQLTPMDRE ARVLRYREKK KTRKFEKTIR YASRKAYAET RPRIKGRFAK  360
RTDVEVEVEQ MFSTALMAET GYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868481.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868481.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-151COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2P6S3H30.0A0A2P6S3H3_ROSCH; Putative transcription factor C2C2-CO-like family
STRINGEOY038910.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-108CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]