PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015868431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 343aa MW: 36810.1 Da PI: 7.3008 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_015868431.1 145 YECKTCNRTFPSFQALGGHRASH 167 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00051 | 241 | 263 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H XP_015868431.1 241 HECSVCGSEFTSGQALGGHMRRH 263 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.2E-13 | 144 | 169 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.32E-8 | 144 | 167 | No hit | No description |
SMART | SM00355 | 0.052 | 145 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 145 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.32E-8 | 236 | 263 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-4 | 239 | 263 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.023 | 241 | 263 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.6E-11 | 241 | 265 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 241 | 268 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 243 | 263 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MLLTCTWLSL CFVCLPLNNN DESQSHLIVK GKRTKRRHRS PSSPSPPTLL AATSSSSSAT 60 AGGDEYLSLS SPTTSSGGGG CGGGGEIYES TEEEEDMANC LILLAQGDHA FKQIEKLSPT 120 ITTTTTTTAA NTSVSGVGKA GFFVYECKTC NRTFPSFQAL GGHRASHKKP RAAMVEDKKA 180 SPPISTNIMD IEYEDVLVFN KVNSTSNITT APPTSHNNSM PLQQIANVKA FIQSNKAAKI 240 HECSVCGSEF TSGQALGGHM RRHRAASSAQ SLEIVTNTST STSTTRTSNN SSMDEMKQRN 300 ILALDLNLPA PEDDHHRESN KFQFVPTQQA LVFSSPALVD CHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015868431.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868431.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2P6QGP9 | 1e-82 | A0A2P6QGP9_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004294532.1 | 2e-77 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-46 | C2H2 family protein |