PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868336.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 242aa    MW: 27441.3 Da    PI: 10.122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.5e-065174226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k  lC+ f   G C yG +C+FaHg
  XP_015868336.1 51 KSQLCKKFKY-GSCTYGYKCRFAHG 74
                    7789999987.*************8 PP
2zf-CCCH28.33.1e-09155181127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC ++ rt  C yG  C+FaHg+
  XP_015868336.1 155 FKTKLCYNWDRTRNCAYGRDCCFAHGR 181
                     69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-124581IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-74879IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-64975IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6524976IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-12150185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8153185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.061154182IPR000571Zinc finger, CCCH-type
SMARTSM003560.035154181IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7155181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTNKSVRTDT PQLFAPNLES MSAIECQSFK NPSIPKVASN SRIPMAQNNF KSQLCKKFKY  60
GSCTYGYKCR FAHGSADVRR PLLRSQGVLN EKDRLELPKT FRHRNGNVRE EWAIAIDTST  120
GSTESHITGS SRLEGKRWVN RNLDANRLNP KPVIFKTKLC YNWDRTRNCA YGRDCCFAHG  180
RAEMQKFSGH TSLGCGISQP TIPKTCDGAK NALSCRTGLE LQDLKFTWSE LGRMSRIYAD  240
WI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868336.10.0zinc finger CCCH domain-containing protein 39-like
RefseqXP_015871151.10.0zinc finger CCCH domain-containing protein 39-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-14C3H family protein