PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015868235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 227aa MW: 26022.3 Da PI: 9.0777 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.6 | 9.6e-31 | 24 | 78 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++YkeClkNhAa++Gg a+DGCgEfmp+ g+ gt++alkC+AC+CHRnFHR++ + XP_015868235.1 24 VAVYKECLKNHAAAIGGIATDGCGEFMPA-GKLGTVEALKCSACNCHRNFHRKHIQ 78 679*************************9.888********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.0E-27 | 26 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-29 | 27 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.485 | 27 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-20 | 27 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 149 | 223 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.58E-17 | 156 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-24 | 162 | 218 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSSNSINPSG ERNGEIIMEE QKKVAVYKEC LKNHAAAIGG IATDGCGEFM PAGKLGTVEA 60 LKCSACNCHR NFHRKHIQPD GCDRDRDYHS SSPVFFLNHN NDNNAAGKKP IRWGHQNAVI 120 LGSSQQAWHP TKPSFEVSYK NKSGDDDDDD DQVHEKEKVM MRKRFRTKFS QQQKEKMLKF 180 AEKVEWKIHT VEDSEVQKFC QEVGIKRSVL KVWMHNNKHN FANKNRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-19 | 161 | 220 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015868235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868235.1 | 1e-171 | zinc-finger homeodomain protein 4-like | ||||
TrEMBL | V4SLC9 | 5e-64 | V4SLC9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466561.1 | 3e-65 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-56 | homeobox protein 31 |