PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867890.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 509aa MW: 57484.8 Da PI: 9.1939

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.7e-32	70	123	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_015867890.1 70 PRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 123 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-29	66	124	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.791	66	126	IPR017930	Myb domain
SuperFamily	SSF46689	1.25E-14	69	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	70	125	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-9	71	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MEASLSSGRS ECLKTSPSNQ NDDQGGISES GENDDESNKT QNGGSSSNST IDESEKRGSS 60 VRPYVRSKLP RLRWTPDLHL RFVHAVERLG GQERATPKLV LQLMNIKGLS IAHVKSHLQM 120 YRSKKTDDPS QVIADHRHLV ECGDRNIYNF SQLPMLQGYN YNQTHSSSFR YGYHDNASPW 180 NAYNGNLKHS RSSSSSSSPF YGTDKIFGGN TTTSNWASTF HFPTGISSFS TTHDQQSSSW 240 KIHKPKDEML IQPYQNRESW THYNNLQPKA VQELTDSFLF PRYGYHDNAS PWNAYNGNLK 300 HSRSSSSSSS PFYGTDKIFG GNTTTSNWAS TFHFPTGISS FSTTHDQQSS SWKIHKPKDE 360 MLIQPYQNRE SWTHYNNLQP KAVQELTGLN KNNNNNNNNN NNNALPDSNT RTSIQDWKMP 420 KRKASDNCNL DLDLSLRITS RNEMDQNHQK SSTLLGEDEV DSNLSLSLYS SSTSLSLKSA 480 KLSRLKVEGT EDRKDQHARK RASTLDLTI

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MEASLSSGRS ECLKTSPSNQ NDDQGGISES GENDDESNKT QNGGSSSNST IDESEKRGSS  60
VRPYVRSKLP RLRWTPDLHL RFVHAVERLG GQERATPKLV LQLMNIKGLS IAHVKSHLQM  120
YRSKKTDDPS QVIADHRHLV ECGDRNIYNF SQLPMLQGYN YNQTHSSSFR YGYHDNASPW  180
NAYNGNLKHS RSSSSSSSPF YGTDKIFGGN TTTSNWASTF HFPTGISSFS TTHDQQSSSW  240
KIHKPKDEML IQPYQNRESW THYNNLQPKA VQELTDSFLF PRYGYHDNAS PWNAYNGNLK  300
HSRSSSSSSS PFYGTDKIFG GNTTTSNWAS TFHFPTGISS FSTTHDQQSS SWKIHKPKDE  360
MLIQPYQNRE SWTHYNNLQP KAVQELTGLN KNNNNNNNNN NNNALPDSNT RTSIQDWKMP  420
KRKASDNCNL DLDLSLRITS RNEMDQNHQK SSTLLGEDEV DSNLSLSLYS SSTSLSLKSA  480
KLSRLKVEGT EDRKDQHARK RASTLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897266.1	0.0	myb-like protein H
Refseq	XP_024924814.1	0.0	myb-like protein H
TrEMBL	A0A2P6R8W9	2e-89	A0A2P6R8W9_ROSCH; Putative transcription factor MYB-HB-like family
STRING	cassava4.1_026842m	1e-87	(Manihot esculenta)
STRING	XP_004302585.1	1e-87	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-62	G2-like family protein