PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867766.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

TCP

Protein Properties

Length: 417aa MW: 43856.9 Da PI: 6.5176

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115	9.9e-36	120	224	1	104
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.kaaks 93 aa+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ +++ai+e+tgt++ +a ++ +s + + s+ + ++a++ XP_015867766.1 120 AAARRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVsVGGSLKIPTT-SNTTdHNANE 213 5899*************************************************************9999966632222222222.2222122222 PP TCP 94 aakskksqksa 104 +++k+++ s+ XP_015867766.1 214 RTTKKRKRPSN 224 22222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-29	126	226	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.157	127	181	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MTSYLEQEMD QDDDGGGTSD LSTSAGEPED NPTSITSTEN KNTNNSNNGV SRPANFDDSI 60 AFQTIPLKEE PFDSESQSED DQKTQPLPPA SSASIGMVPV AMQMQMPMPI PMPMPVSTAA 120 AARRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH KSDGETVRWL LEHSEQAIIE 180 ATGTGTVPAI AVSVGGSLKI PTTSNTTDHN ANERTTKKRK RPSNSEFVDV SETISQSSGL 240 APVGPATPAA VPQGLVPVWA VGNAGMMVPA NAIWMIPQPT AGTGVVLGHG NANQQPQIWA 300 LSPAAVTPVY NMAARPISSF VANQPAAGTA GVEVRTTTCS TSSAVVCNSG LSNSAVSTST 360 VGTKAAKKAS TMALSLSSSG SGKAQMLRDF SLEIYDKQEL QFMGRPGNHH QTQSSKH

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MTSYLEQEMD QDDDGGGTSD LSTSAGEPED NPTSITSTEN KNTNNSNNGV SRPANFDDSI  60
AFQTIPLKEE PFDSESQSED DQKTQPLPPA SSASIGMVPV AMQMQMPMPI PMPMPVSTAA  120
AARRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH KSDGETVRWL LEHSEQAIIE  180
ATGTGTVPAI AVSVGGSLKI PTTSNTTDHN ANERTTKKRK RPSNSEFVDV SETISQSSGL  240
APVGPATPAA VPQGLVPVWA VGNAGMMVPA NAIWMIPQPT AGTGVVLGHG NANQQPQIWA  300
LSPAAVTPVY NMAARPISSF VANQPAAGTA GVEVRTTTCS TSSAVVCNSG LSNSAVSTST  360
VGTKAAKKAS TMALSLSSSG SGKAQMLRDF SLEIYDKQEL QFMGRPGNHH QTQSSKH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867766.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867766.1	0.0	transcription factor TCP19-like
Swissprot	O64647	1e-71	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2P5CSL8	1e-169	A0A2P5CSL8_TREOI; TCP transcription factor
STRING	EMJ12256	1e-153	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-63	TCP family protein