PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015867744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 19576.8 Da PI: 7.2922 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.2 | 8.5e-15 | 37 | 129 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk ++s +++ l +pk f++ +g++ s t+ ++gr+W++ l ++ gr+ + GW++Fv+ +++g ++F++dg s+f +v XP_015867744.1 37 FFKMIIQSTIDNKK-LKIPKVFVKIYGKE-LASSVATVSLPDGRTWKLGL--ERANGRTSFVVGWQRFVDHYSIRSGYCLLFRYDGFSKF--HVY 125 77877777777766.********777654.5555788888**********..99999999999*********************998888..999 PP EE-S CS B3 96 vfrk 99 ++++ XP_015867744.1 126 ILDN 129 9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.1E-21 | 29 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-19 | 33 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-15 | 35 | 128 | No hit | No description |
PROSITE profile | PS50863 | 13.084 | 36 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-10 | 37 | 129 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-12 | 37 | 130 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MTPKRRNGGG NINVWPSRHN HHMHGPSSSK RKPKPHFFKM IIQSTIDNKK LKIPKVFVKI 60 YGKELASSVA TVSLPDGRTW KLGLERANGR TSFVVGWQRF VDHYSIRSGY CLLFRYDGFS 120 KFHVYILDNR SIEIYYPYNA QSATFDDDSE DHEVEPTYDD DDDDDDEDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015867744.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024924774.1 | 1e-123 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_024924775.1 | 1e-123 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_024933603.1 | 1e-123 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_024933604.1 | 1e-123 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_024933605.1 | 1e-123 | B3 domain-containing transcription factor VRN1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-28 | B3 family protein |