PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867725.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 387aa    MW: 42609.1 Da    PI: 5.8718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20178227255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a+++a+ kl+g
  XP_015867725.1 178 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTYDTAEEAALAYDKAAYKLRG 227
                     59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-33177237No hitNo description
PROSITE profilePS5103223.117178235IPR001471AP2/ERF domain
SMARTSM003805.0E-37178241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-32178236IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-23178236IPR016177DNA-binding domain
PfamPF008472.7E-14179227IPR001471AP2/ERF domain
PRINTSPR003678.5E-11179190IPR001471AP2/ERF domain
PRINTSPR003678.5E-11201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAAAIDIYSS SSTNPVVFSD PFREELMKAL EPFMKSASST SSITSLPASP SSPCSSSSSS  60
HFSSYPSCSY SPISSSSQTN LHPDFCSPSS THMFSQGFSG YNQMGFEQTG SIGLNQLTQS  120
QILQIQAQIY YQQQQKQQQD MLSNQWQRQT NPNLNNYLSP KSIPMKQIGT PSKPTTKLYR  180
GVRQRHWGKW VAEIRLPKNR TRLWLGTYDT AEEAALAYDK AAYKLRGDFA RLNFPHLRHQ  240
GAHISGEFGD YKPLHSSVDA KLQAICQSLA NSQKQGSSSN TGELCSVAEE KPTISAPSQA  300
KMVSENSLTG ELKSECESFV ADNRCCKVEA LSSPSLSDES TSSSLAGSSS PESEITFLDF  360
SDSQWNSDME NFGLEKYPSE EIDWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22177235160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867725.10.0ethylene-responsive transcription factor RAP2-4-like
TrEMBLB9H5441e-146B9H544_POPTR; ERF family protein
STRINGPOPTR_0005s07900.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-57related to AP2 4