PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015867658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 511aa MW: 55606.7 Da PI: 6.1964 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.4e-39 | 146 | 206 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny++ qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_015867658.1 146 PDKILPCPRCNSMDTKFCYYNNYNVDQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 206 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 143 | 203 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-32 | 148 | 204 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.798 | 150 | 204 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 152 | 188 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 511 aa Download sequence Send to blast |
MSEPKDPAIK LFGMTIPVPE VSVSSGYSPG APRSSSSSSA PVLEDGKDQE RASSSNSLIE 60 ANTNRDGDER EVDMDSLREK QTETTLEDGA QPLSSEDFMN PDPIPGIGGN PKTPSIETGT 120 ATLKSSKSEE EQSETSNSQE KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV DQPRHFCKNC 180 QRYWTAGGTM RNVPVGAGRR KNKNSASHYR HLTVSEALQN ARTDVPNGIH GHHPSLKSNG 240 TVLTFGSDTP LCESMASVLS LADKTMRNST RNGLHKPEKL RVPVTYGGGE NGDDPLGGSS 300 VITTDTKHEE CKTGSQEQVM QNCQGFQPQM PCYPGAPWPY PWNSAQWSPP VPLPPFCPPG 360 FPMPFYPAAA YWGCSVPGTW NIPWLPQPPS PNQTALCSGP NSPTLGKHSR DENTLKANCS 420 GEEEPPKENN AERCLWIPKT LRIDDPGEAA KSSIWATLGI KNDKADSFSG RGLFKAFQSK 480 SDDKNHVAET SPVLQANPAA LSRSFNFQES S |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015867658.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867658.1 | 0.0 | cyclic dof factor 2-like | ||||
TrEMBL | A0A2P5FF12 | 0.0 | A0A2P5FF12_TREOI; Zinc finger, Dof-type | ||||
STRING | XP_010088142.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-107 | cycling DOF factor 2 |