PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867658.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 511aa MW: 55606.7 Da PI: 6.1964

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	146	206	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny++ qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_015867658.1 146 PDKILPCPRCNSMDTKFCYYNNYNVDQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 206 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	143	203	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	148	204	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	150	204	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	152	188	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MSEPKDPAIK LFGMTIPVPE VSVSSGYSPG APRSSSSSSA PVLEDGKDQE RASSSNSLIE 60 ANTNRDGDER EVDMDSLREK QTETTLEDGA QPLSSEDFMN PDPIPGIGGN PKTPSIETGT 120 ATLKSSKSEE EQSETSNSQE KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV DQPRHFCKNC 180 QRYWTAGGTM RNVPVGAGRR KNKNSASHYR HLTVSEALQN ARTDVPNGIH GHHPSLKSNG 240 TVLTFGSDTP LCESMASVLS LADKTMRNST RNGLHKPEKL RVPVTYGGGE NGDDPLGGSS 300 VITTDTKHEE CKTGSQEQVM QNCQGFQPQM PCYPGAPWPY PWNSAQWSPP VPLPPFCPPG 360 FPMPFYPAAA YWGCSVPGTW NIPWLPQPPS PNQTALCSGP NSPTLGKHSR DENTLKANCS 420 GEEEPPKENN AERCLWIPKT LRIDDPGEAA KSSIWATLGI KNDKADSFSG RGLFKAFQSK 480 SDDKNHVAET SPVLQANPAA LSRSFNFQES S

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MSEPKDPAIK LFGMTIPVPE VSVSSGYSPG APRSSSSSSA PVLEDGKDQE RASSSNSLIE  60
ANTNRDGDER EVDMDSLREK QTETTLEDGA QPLSSEDFMN PDPIPGIGGN PKTPSIETGT  120
ATLKSSKSEE EQSETSNSQE KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV DQPRHFCKNC  180
QRYWTAGGTM RNVPVGAGRR KNKNSASHYR HLTVSEALQN ARTDVPNGIH GHHPSLKSNG  240
TVLTFGSDTP LCESMASVLS LADKTMRNST RNGLHKPEKL RVPVTYGGGE NGDDPLGGSS  300
VITTDTKHEE CKTGSQEQVM QNCQGFQPQM PCYPGAPWPY PWNSAQWSPP VPLPPFCPPG  360
FPMPFYPAAA YWGCSVPGTW NIPWLPQPPS PNQTALCSGP NSPTLGKHSR DENTLKANCS  420
GEEEPPKENN AERCLWIPKT LRIDDPGEAA KSSIWATLGI KNDKADSFSG RGLFKAFQSK  480
SDDKNHVAET SPVLQANPAA LSRSFNFQES S

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867658.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867658.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2P5FF12	0.0	A0A2P5FF12_TREOI; Zinc finger, Dof-type
STRING	XP_010088142.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-107	cycling DOF factor 2