PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867592.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 427aa MW: 46238 Da PI: 6.562

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.1e-10	227	285	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ XP_015867592.1 227 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 285 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	223	287	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	225	288	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	227	278	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-10	227	281	No hit	No description
Pfam	PF00170	1.1E-8	227	281	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.97E-26	228	277	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDKDKSSGHG GGLPPPSGRY SGFSPSGNSF NVKSEPSSSA SFPPLAPGAT SDLGHFGHGM 60 STDSGRFSHD LSRMPDNPPR NLGHRRAHSE ILTLPDDISF DSDLGVVGGA DGPSFSDETE 120 EDLLSMYLDM DKFNSSSATS AFQVGEASSQ GAPSTLAGAP VSGAAENVAI GSNERPRVRH 180 QHSQSMDGST TIKPEMLVSG SEDLSAADSK KAMSAAKLAE LALIDPKRAK RIWANRQSAA 240 RSKERKMRYI AELERKVQTL QTEATSLSAQ LTLLQRDTNG LTAENSELKL RLQTMEQQVH 300 LQDALNDALK EEIQHLKVLT GQSMANGGPM MNYASFGGGG QQFYPNNHVH TLLTAQQFQQ 360 LQIHSQKHQH PFQQHQLHQL QQQQMQQQQE QQPQQQSGDL KIRGTMPSPS QKDNNASDAN 420 SSASKDC

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDKDKSSGHG GGLPPPSGRY SGFSPSGNSF NVKSEPSSSA SFPPLAPGAT SDLGHFGHGM  60
STDSGRFSHD LSRMPDNPPR NLGHRRAHSE ILTLPDDISF DSDLGVVGGA DGPSFSDETE  120
EDLLSMYLDM DKFNSSSATS AFQVGEASSQ GAPSTLAGAP VSGAAENVAI GSNERPRVRH  180
QHSQSMDGST TIKPEMLVSG SEDLSAADSK KAMSAAKLAE LALIDPKRAK RIWANRQSAA  240
RSKERKMRYI AELERKVQTL QTEATSLSAQ LTLLQRDTNG LTAENSELKL RLQTMEQQVH  300
LQDALNDALK EEIQHLKVLT GQSMANGGPM MNYASFGGGG QQFYPNNHVH TLLTAQQFQQ  360
LQIHSQKHQH PFQQHQLHQL QQQQMQQQQE QQPQQQSGDL KIRGTMPSPS QKDNNASDAN  420
SSASKDC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867592.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867590.1	0.0	probable transcription factor PosF21
Refseq	XP_015867591.1	0.0	probable transcription factor PosF21
Refseq	XP_015867592.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-154	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M5XCD0	0.0	M5XCD0_PRUPE; Uncharacterized protein
STRING	XP_008222595.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-146	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]