PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867542.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 360aa MW: 41848.7 Da PI: 6.5855

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.1	1.4e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk++ XP_015867542.1 7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQElcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 100 69**************************.9***********954555552555******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s +++l+g++ktLvfykgrap+g+k+dW+mheyrle XP_015867542.1 101 YS-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .889*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.269	7	156	IPR003441	NAC domain
Pfam	PF02365	9.1E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MNTFTHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYKIEPW DLQELCKIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSRHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VRKMGDYESP CWYDDQVSFM 180 PGELESPRRI SHPYTSYHHH YACKQELELQ FNMPPDPFLQ LPQLESPKVP QSAGSVTCNS 240 VVVPSYGFDR NNNNNNNGST MQSSTLTQEE QLQQNMNSIY NEQAVDQVTD WRVLDKFVAS 300 QLSHDQDAPK ENNYSLNSSS TVFHVAEQMN LLANESKRPE MGQEYASNST STSCQIDLWK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MNTFTHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYKIEPW DLQELCKIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VRKMGDYESP CWYDDQVSFM  180
PGELESPRRI SHPYTSYHHH YACKQELELQ FNMPPDPFLQ LPQLESPKVP QSAGSVTCNS  240
VVVPSYGFDR NNNNNNNGST MQSSTLTQEE QLQQNMNSIY NEQAVDQVTD WRVLDKFVAS  300
QLSHDQDAPK ENNYSLNSSS TVFHVAEQMN LLANESKRPE MGQEYASNST STSCQIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-51	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867542.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867542.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-163	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A061GBJ7	0.0	A0A061GBJ7_THECC; NAC domain protein, IPR003441 isoform 1
STRING	VIT_02s0154g00020.t01	0.0	(Vitis vinifera)
STRING	EOY24430	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-164	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]