PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015867515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | YABBY | ||||||||
Protein Properties | Length: 175aa MW: 19438 Da PI: 8.0729 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 77 | 6.2e-24 | 6 | 67 | 4 | 65 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshlde 65 + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhCt+l svn+a a q ++ ++ + XP_015867515.1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSMSWQDVQAQ 67 5689********************************************99998887775333 PP | |||||||
2 | YABBY | 79.1 | 1.4e-24 | 107 | 148 | 130 | 170 |
YABBY 130 nr.fikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 nr f +eeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_015867515.1 107 NRlFGREEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 148 443789**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-48 | 8 | 148 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLLDIVTVR CGHCTNLWSV NMAAAFQSMS 60 WQDVQAQNYG YTAPTDYRID SGSSSRGSNK IAVRAPTANV TEERVVNRLF GREEIQRIKA 120 NNPDISHREA FSTAAKNWAH FPHIHFGLML ETNNQTKLDN GSGKHHLSRT PLLNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015867515.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090216 | 4e-75 | BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024924682.1 | 1e-127 | axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 3e-72 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | D7TC40 | 4e-97 | D7TC40_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 6e-98 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-74 | YABBY family protein |
Publications ? help Back to Top | |||
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