PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867486.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 133aa    MW: 14682.6 Da    PI: 10.4342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-191765355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr +k +grWvAe+r p++   r r++lg++ taeeAa+a++aa  +l+g
  XP_015867486.1 17 YKGVRMRK-WGRWVAEVRQPKS---RHRIWLGSYSTAEEAARAYDAAVFCLRG 65
                    9*****99.*******999854...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.53E-291675No hitNo description
SMARTSM003802.2E-371679IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-221674IPR016177DNA-binding domain
PROSITE profilePS5103223.2351673IPR001471AP2/ERF domain
PRINTSPR003671.3E-91728IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-311775IPR001471AP2/ERF domain
PfamPF008471.3E-131765IPR001471AP2/ERF domain
PRINTSPR003671.3E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVKSTSTTRR GRRNGIYKGV RMRKWGRWVA EVRQPKSRHR IWLGSYSTAE EAARAYDAAV  60
FCLRGPSALL NFPESPPEIS SAGELSPSQI QEAAVRHAHK VGVAQKSGIE GGGSIAGFTV  120
EEDRNLLYGA YYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-181173972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867486.14e-94ethylene-responsive transcription factor ERF018-like
SwissprotQ9S7L56e-35ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A2P5EGK96e-50A0A2P5EGK9_TREOI; AP2/ERF domain containing protein
STRINGEOY302043e-45(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15296813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.16e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]