PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867472.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 204aa    MW: 22601.7 Da    PI: 4.4439
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-181565155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGVr +k +g++v+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  XP_015867472.1 15 SRYKGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALYCLRG 65
                    79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-201574IPR016177DNA-binding domain
CDDcd000181.52E-281575No hitNo description
PfamPF008473.3E-101565IPR001471AP2/ERF domain
PROSITE profilePS5103221.5221673IPR001471AP2/ERF domain
SMARTSM003806.2E-311679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-291674IPR001471AP2/ERF domain
PRINTSPR003671.8E-91728IPR001471AP2/ERF domain
PRINTSPR003671.8E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKRTETVKPA ERSDSRYKGV RKRKWGKYVS EIRLPNSRER IWLGSYDTAE KAARAFDAAL  60
YCLRGRTAKF NFPDNPPEID GGRSLTPAEI QVAASRFANS DPQKSNSDVC ISESQSQMES  120
ASSPSPSVSE GSGTVQLDSD TTTDGSFLDL FRTMGSGNYA SDYGLFPGFD DFSSDFFNPP  180
PPPVDYGEDN VDDVIPQDSF LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1715731372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867472.11e-148ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-61ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLW6FFV71e-100W6FFV7_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010099089.11e-100(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]