PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867319.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 265aa    MW: 28368.7 Da    PI: 5.7837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-1597146155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykG+r ++ +g+Wv+eIr+p++   ++r++lg+f t+++Aa a++ a+++l+g
  XP_015867319.1  97 SRYKGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTPDMAAVAYDVAALALKG 146
                     79****9.55.6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-897146IPR001471AP2/ERF domain
CDDcd000183.10E-2797154No hitNo description
SuperFamilySSF541717.85E-1897155IPR016177DNA-binding domain
SMARTSM003807.8E-2898160IPR001471AP2/ERF domain
PROSITE profilePS5103219.91598154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2598155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSDSDTPTNV RQVVDQPNVH LPSLPYLDFP PHPFLSLDPT LPPPPFPLPP APPPPPPPPP  60
SSSSTSSALN PNLHHLQHHH THPNTNSMAS SSSGKHSRYK GIRCRSGKWV SEIREPRKTT  120
RIWLGTFPTP DMAAVAYDVA ALALKGNDAV LNFPSLVGKY PVPDSSSAAD IRKAATAAAA  180
AKMADWREGM GGNSEPSSKK DDGTLSGDRL SLSGGEFVDE EELFGMPNLL VDMAEGMLVS  240
PPRMSSSDDS PGNYSDGVES LWNYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13951541172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867319.10.0ethylene-responsive transcription factor ERF027-like
RefseqXP_015901879.10.0ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2I4EM632e-63A0A2I4EM63_JUGRE; ethylene-responsive transcription factor ERF027-like
STRINGXP_009339653.11e-61(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-34ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]