PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867031.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 315aa    MW: 35181.9 Da    PI: 9.631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12119165354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  XP_015867031.1 119 KSHSQAEKRRRDRINAQLSTLRKLIPKS-----DKMDKAALLGSVIDQVKDL 165
                     79*************************8.....7***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-12118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-14119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-9119168No hitNo description
PfamPF000104.0E-10119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.06E-5214285No hitNo description
Gene3DG3DSA:3.30.70.2606.7E-6215273No hitNo description
CDDcd048733.46E-7219287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MWDKKQRELE LRYLQIQCFV FNFSLVFCFF FPQERSNNME NVYHPNWSEP ANSSRYKSAT  60
ISSSTTATST ESSFLLPWSL SPHASTSSTF QFSGFPSTTS SGSIPFERIA EDRAAAASKS  120
HSQAEKRRRD RINAQLSTLR KLIPKSDKMD KAALLGSVID QVKDLKRKAM EVSKAIIVPT  180
EVDEVAIESS TDELSEGQDV NLSVSKSNNS NNNNTYIRVS VCCEDRPELF SELIQVLKGL  240
KLSAVRAEVA SVGGRIKSVL VLSSNKDTDD KEAICINSLK QSLKLVLTKI ASSSVPSNCR  300
IRSKRQRFFL PSHFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867026.10.0transcription factor bHLH51 isoform X1
RefseqXP_015867031.10.0transcription factor bHLH51 isoform X2
TrEMBLW9RZG01e-108W9RZG0_9ROSA; Uncharacterized protein
STRINGXP_010105437.11e-109(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-48bHLH family protein