PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015866884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 38977.6 Da PI: 6.9428 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.6e-18 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a++ a+++l+g XP_015866884.1 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRG 71 689******.7*********....4456*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-28 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-35 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.363 | 22 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.66E-17 | 22 | 79 | No hit | No description |
Pfam | PF00847 | 4.8E-12 | 22 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 23 | 34 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 23 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-7 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGPPSDSVIR GRRKSSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEDAAR 60 AYDDAARALR GVNARTNFDL PHHRHSSASH IGTTSSGDHA EPFSFEDICC GGGNSIGTTE 120 TEEGLLGALK AKLLDGRGLR VLPLLPNNNN IKIKGSNNNN NNNTNAELKA STSTTAATSS 180 ITINGDGSSY ANSNSMQPDH LLSHHHHVGN VQWHHHDHDQ LAAGNNSQTI ISTSTQPSAA 240 VWSNGNSNNN SQVNHLESWV PQLKHMVPDH HDQDGLFAAV TWAVPRLDSS SVNNLSYTDK 300 FYCSLEPPTI KVDANLSSSS AIHHGTSEGF WSSDHQQFEV CQGANASWDP LFYMSSVLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 20 | 83 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015866884.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866884.1 | 0.0 | dehydration-responsive element-binding protein 2G-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11333 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-16 | related to AP2 11 |