PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866742.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 91aa    MW: 10633 Da    PI: 8.8399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-10851344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a +++ ++   +W  +a+ +g g+t++++k ++
   XP_015866742.1  8 YWTPKQNKLFEKALALYDKDtpdRWQNVAKAVG-GKTAEEVKRHY 51
                     6********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.022459IPR017884SANT domain
SMARTSM007174.4E-9557IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-13763IPR009057Homeodomain-like
PfamPF002493.5E-8851IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5985IPR009057Homeodomain-like
CDDcd001673.70E-7955No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAQSSSSYWT PKQNKLFEKA LALYDKDTPD RWQNVAKAVG GKTAEEVKRH YEILLEDLRQ  60
IESGRIPFPN YKSTGRDADE EERLIKYLKL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-35391593RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866742.13e-62protein RADIALIS-like 3
SwissprotQ1A1732e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445I0A32e-45A0A445I0A3_GLYSO; Protein RADIALIS-like 6
TrEMBLI1LJC82e-45I1LJC8_SOYBN; Uncharacterized protein
STRINGGLYMA11G12460.13e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-38RAD-like 6