PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866679.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 348aa MW: 36561.6 Da PI: 8.6928

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	66	124	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ XP_015866679.1 66 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNI 124 57899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.2E-33	68	123	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-25	69	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MIQELLGGAG LIAGERKISI HGGRVLEATP PLSHSPSHSS SSSSSSTTTT TATTATTSSA 60 ATTSNSENLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK 120 NKNISVSASV AAKTSAGKMK MVASDIGVRS GFCGGGGFDH ELPASPILWG SPQNSHLLTL 180 LRSTQNPNPS SLCNSMAVKE ESGMIGSHMM TEQAVVASGS MNGRSCSLGL DPVLGQVPSL 240 GLCSSFWRSN QNHQPPTHQQ NGFVVGEVQS NGIQELYQRL RSSANYYGDH SAVVLTNVGS 300 SSSSSSSSSA STMTTSILES APVSGGELGY WNPAFSWSDL PTTNGAYP

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MIQELLGGAG LIAGERKISI HGGRVLEATP PLSHSPSHSS SSSSSSTTTT TATTATTSSA  60
ATTSNSENLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK  120
NKNISVSASV AAKTSAGKMK MVASDIGVRS GFCGGGGFDH ELPASPILWG SPQNSHLLTL  180
LRSTQNPNPS SLCNSMAVKE ESGMIGSHMM TEQAVVASGS MNGRSCSLGL DPVLGQVPSL  240
GLCSSFWRSN QNHQPPTHQQ NGFVVGEVQS NGIQELYQRL RSSANYYGDH SAVVLTNVGS  300
SSSSSSSSSA STMTTSILES APVSGGELGY WNPAFSWSDL PTTNGAYP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866679.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-40	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924337.1	0.0	dof zinc finger protein DOF1.1-like
Refseq	XP_024932646.1	0.0	dof zinc finger protein DOF1.1-like
TrEMBL	A0A2I4F418	1e-136	A0A2I4F418_JUGRE; dof zinc finger protein DOF5.3-like
STRING	POPTR_0007s11620.1	1e-136	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	4e-33	Dof family protein